case class SourceRead(id: String, bases: Array[Byte], quals: Array[Byte], cigar: Cigar, sam: Option[SamRecord] = None) extends SimpleRead with Product with Serializable
Stores information about a read to be fed into a consensus.
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- by any2stringadd
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final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
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final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from SourceRead to any2stringadd[SourceRead] performed by method any2stringadd in scala.Predef.
- Definition Classes
- any2stringadd
-
def
->[B](y: B): (SourceRead, B)
- Implicit
- This member is added by an implicit conversion from SourceRead to ArrowAssoc[SourceRead] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc
- Annotations
- @inline()
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final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
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final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
-
def
baseString: String
Returns the consensus read a String - mostly useful for testing.
Returns the consensus read a String - mostly useful for testing.
- Definition Classes
- SimpleRead
-
val
bases: Array[Byte]
- Definition Classes
- SourceRead → SimpleRead
- val cigar: Cigar
-
def
clone(): AnyRef
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
ensuring(cond: (SourceRead) ⇒ Boolean, msg: ⇒ Any): SourceRead
- Implicit
- This member is added by an implicit conversion from SourceRead to Ensuring[SourceRead] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: (SourceRead) ⇒ Boolean): SourceRead
- Implicit
- This member is added by an implicit conversion from SourceRead to Ensuring[SourceRead] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean, msg: ⇒ Any): SourceRead
- Implicit
- This member is added by an implicit conversion from SourceRead to Ensuring[SourceRead] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): SourceRead
- Implicit
- This member is added by an implicit conversion from SourceRead to Ensuring[SourceRead] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
def
finalize(): Unit
- Attributes
- protected[java.lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( classOf[java.lang.Throwable] )
-
def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from SourceRead to StringFormat[SourceRead] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
- Annotations
- @inline()
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final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
-
val
id: String
- Definition Classes
- SourceRead → SimpleRead
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
-
def
length: Int
Gets the length of the consensus read.
Gets the length of the consensus read.
- Definition Classes
- SimpleRead
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
-
val
quals: Array[Byte]
- Definition Classes
- SourceRead → SimpleRead
- val sam: Option[SamRecord]
-
final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
-
final
def
wait(): Unit
- Definition Classes
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- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
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- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
def
→[B](y: B): (SourceRead, B)
- Implicit
- This member is added by an implicit conversion from SourceRead to ArrowAssoc[SourceRead] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc