case class PhaseBlockLengthMetric(dataset: String, length: Long = 0, count: Long = 0) extends Metric with Product with Serializable

Metrics produced by AssessPhasing describing the number of phased blocks of a given length. The output will have multiple rows, one for each observed phased block length.

dataset

The name of the dataset being assessed (i.e. "truth" or "called").

length

The length of the phased block.

count

The number of phased blocks of the given length.

Linear Supertypes
Serializable, Serializable, Metric, Iterable[(String, String)], IterableLike[(String, String), Iterable[(String, String)]], GenIterable[(String, String)], GenIterableLike[(String, String), Iterable[(String, String)]], Traversable[(String, String)], GenTraversable[(String, String)], GenericTraversableTemplate[(String, String), Iterable], TraversableLike[(String, String), Iterable[(String, String)]], GenTraversableLike[(String, String), Iterable[(String, String)]], Parallelizable[(String, String), ParIterable[(String, String)]], TraversableOnce[(String, String)], GenTraversableOnce[(String, String)], FilterMonadic[(String, String), Iterable[(String, String)]], HasNewBuilder[(String, String), Iterable[(String, String)] @scala.annotation.unchecked.uncheckedVariance], Product, Equals, AnyRef, Any
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  1. PhaseBlockLengthMetric
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  3. Serializable
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  8. GenIterableLike
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Implicitly
  1. by MonadOps
  2. by CollectionsHaveToParArray
  3. by any2stringadd
  4. by StringFormat
  5. by Ensuring
  6. by ArrowAssoc
  7. by alternateImplicit
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Instance Constructors

  1. new PhaseBlockLengthMetric(dataset: String, length: Long = 0, count: Long = 0)

    dataset

    The name of the dataset being assessed (i.e. "truth" or "called").

    length

    The length of the phased block.

    count

    The number of phased blocks of the given length.

Type Members

  1. type Proportion = Double
    Definition Classes
    Metric
  2. type Self = Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  3. class WithFilter extends FilterMonadic[A, Repr]
    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to any2stringadd[PhaseBlockLengthMetric] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ++[B >: (String, String), That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
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    TraversableLike → GenTraversableLike
  5. def ++:[B >: (String, String), That](that: Traversable[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike
  6. def ++:[B >: (String, String), That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike
  7. def ->[B](y: B): (PhaseBlockLengthMetric, B)
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to ArrowAssoc[PhaseBlockLengthMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
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    @inline()
  8. def /:[B](z: B)(op: (B, (String, String)) ⇒ B): B
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  9. def :\[B](z: B)(op: ((String, String), B) ⇒ B): B
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  10. final def ==(arg0: Any): Boolean
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  11. def addString(b: StringBuilder): StringBuilder
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  12. def addString(b: StringBuilder, sep: String): StringBuilder
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  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
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  14. def aggregate[B](z: ⇒ B)(seqop: (B, (String, String)) ⇒ B, combop: (B, B) ⇒ B): B
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  15. def apply(name: String): String

    Gets the value of the field by name.

    Gets the value of the field by name.

    Definition Classes
    Metric
  16. final def asInstanceOf[T0]: T0
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    Any
  17. def canEqual(that: Any): Boolean
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  18. def clone(): AnyRef
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  19. def collect[B, That](pf: PartialFunction[(String, String), B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
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  20. def collectFirst[B](pf: PartialFunction[(String, String), B]): Option[B]
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  21. def companion: GenericCompanion[Iterable]
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  22. def copyToArray[B >: (String, String)](xs: Array[B], start: Int, len: Int): Unit
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  23. def copyToArray[B >: (String, String)](xs: Array[B]): Unit
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  24. def copyToArray[B >: (String, String)](xs: Array[B], start: Int): Unit
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  25. def copyToBuffer[B >: (String, String)](dest: Buffer[B]): Unit
    Definition Classes
    TraversableOnce
  26. def count(p: ((String, String)) ⇒ Boolean): Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  27. val count: Long
  28. val dataset: String
  29. def drop(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  30. def dropRight(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike
  31. def dropWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  32. def ensuring(cond: (PhaseBlockLengthMetric) ⇒ Boolean, msg: ⇒ Any): PhaseBlockLengthMetric
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to Ensuring[PhaseBlockLengthMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  33. def ensuring(cond: (PhaseBlockLengthMetric) ⇒ Boolean): PhaseBlockLengthMetric
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to Ensuring[PhaseBlockLengthMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  34. def ensuring(cond: Boolean, msg: ⇒ Any): PhaseBlockLengthMetric
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to Ensuring[PhaseBlockLengthMetric] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  35. def ensuring(cond: Boolean): PhaseBlockLengthMetric
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to Ensuring[PhaseBlockLengthMetric] performed by method Ensuring in scala.Predef.
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    Ensuring
  36. final def eq(arg0: AnyRef): Boolean
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  37. def exists(p: ((String, String)) ⇒ Boolean): Boolean
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  38. def filter(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  39. def filterNot(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  40. def finalize(): Unit
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    @throws( classOf[java.lang.Throwable] )
  41. def find(p: ((String, String)) ⇒ Boolean): Option[(String, String)]
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  42. def flatMap[B, That](f: ((String, String)) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
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  43. def flatten[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[B]
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  44. def fold[A1 >: (String, String)](z: A1)(op: (A1, A1) ⇒ A1): A1
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  45. def foldLeft[B](z: B)(op: (B, (String, String)) ⇒ B): B
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  46. def foldRight[B](z: B)(op: ((String, String), B) ⇒ B): B
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  47. def forall(p: ((String, String)) ⇒ Boolean): Boolean
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  48. def foreach[U](f: ((String, String)) ⇒ U): Unit
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  49. def formatValues(value: Any): String

    Override this method to customize how values are formatted.

    Override this method to customize how values are formatted.

    Attributes
    protected
    Definition Classes
    Metric
  50. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to StringFormat[PhaseBlockLengthMetric] performed by method StringFormat in scala.Predef.
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  51. def genericBuilder[B]: Builder[B, Iterable[B]]
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  52. def get(name: String): Option[String]

    Gets the value of the field by name, returns None if it does not exist.

    Gets the value of the field by name, returns None if it does not exist.

    Definition Classes
    Metric
  53. final def getClass(): Class[_]
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    AnyRef → Any
  54. def groupBy[K](f: ((String, String)) ⇒ K): Map[K, Iterable[(String, String)]]
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  55. def grouped(size: Int): Iterator[Iterable[(String, String)]]
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    IterableLike
  56. def hasDefiniteSize: Boolean
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  57. def head: (String, String)
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  58. def headOption: Option[(String, String)]
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  59. def init: Iterable[(String, String)]
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  60. def inits: Iterator[Iterable[(String, String)]]
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  61. def isEmpty: Boolean
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  62. final def isInstanceOf[T0]: Boolean
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  63. final def isTraversableAgain: Boolean
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  64. def iterator: Iterator[(String, String)]

    Gets an iterator over the fileds of this metric in the order they were defined.

    Gets an iterator over the fileds of this metric in the order they were defined. Returns tuples of names and values

    Definition Classes
    Metric → IterableLike → GenIterableLike
  65. def last: (String, String)
    Definition Classes
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  66. def lastOption: Option[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  67. val length: Long
  68. def map[B, That](f: ((String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  69. def max[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
    Definition Classes
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  70. def maxBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
    Definition Classes
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  71. def min[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
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  72. def minBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
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  73. def mkString: String
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  74. def mkString(sep: String): String
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  75. def mkString(start: String, sep: String, end: String): String
    Definition Classes
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  76. def names: Seq[String]

    Get the names of the arguments in the order they were defined.

    Get the names of the arguments in the order they were defined.

    Definition Classes
    Metric
  77. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  78. def newBuilder: Builder[(String, String), Iterable[(String, String)]]
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  79. def nonEmpty: Boolean
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  80. final def notify(): Unit
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  81. final def notifyAll(): Unit
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  82. def par: ParIterable[(String, String)]
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    Parallelizable
  83. def parCombiner: Combiner[(String, String), ParIterable[(String, String)]]
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    protected[this]
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  84. def partition(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
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  85. def product[B >: (String, String)](implicit num: Numeric[B]): B
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  86. def reduce[A1 >: (String, String)](op: (A1, A1) ⇒ A1): A1
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  87. def reduceLeft[B >: (String, String)](op: (B, (String, String)) ⇒ B): B
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  88. def reduceLeftOption[B >: (String, String)](op: (B, (String, String)) ⇒ B): Option[B]
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  89. def reduceOption[A1 >: (String, String)](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
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  90. def reduceRight[B >: (String, String)](op: ((String, String), B) ⇒ B): B
    Definition Classes
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  91. def reduceRightOption[B >: (String, String)](op: ((String, String), B) ⇒ B): Option[B]
    Definition Classes
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  92. def repr: Iterable[(String, String)]
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  93. def reversed: List[(String, String)]
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    protected[this]
    Definition Classes
    TraversableOnce
  94. def sameElements[B >: (String, String)](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  95. def scan[B >: (String, String), That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
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  96. def scanLeft[B, That](z: B)(op: (B, (String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
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  97. def scanRight[B, That](z: B)(op: ((String, String), B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  98. def seq: Iterable[(String, String)]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  99. def size: Int
    Definition Classes
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  100. def sizeHintIfCheap: Int
    Attributes
    protected[scala.collection]
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  101. def slice(from: Int, until: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  102. def sliding(size: Int, step: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  103. def sliding(size: Int): Iterator[Iterable[(String, String)]]
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  104. def span(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
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  105. def splitAt(n: Int): (Iterable[(String, String)], Iterable[(String, String)])
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  106. def stringPrefix: String
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  107. def sum[B >: (String, String)](implicit num: Numeric[B]): B
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  108. final def synchronized[T0](arg0: ⇒ T0): T0
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  109. def tail: Iterable[(String, String)]
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    TraversableLike → GenTraversableLike
  110. def tails: Iterator[Iterable[(String, String)]]
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  111. def take(n: Int): Iterable[(String, String)]
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  112. def takeRight(n: Int): Iterable[(String, String)]
    Definition Classes
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  113. def takeWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  114. def thisCollection: Iterable[(String, String)]
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    protected[this]
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    IterableLike → TraversableLike
  115. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, (String, String), Col[(String, String)]]): Col[(String, String)]
    Definition Classes
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  116. def toArray[B >: (String, String)](implicit arg0: ClassTag[B]): Array[B]
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  117. def toBuffer[B >: (String, String)]: Buffer[B]
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  118. def toCollection(repr: Iterable[(String, String)]): Iterable[(String, String)]
    Attributes
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    Definition Classes
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  119. def toIndexedSeq: IndexedSeq[(String, String)]
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  120. def toIterable: Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  121. def toIterator: Iterator[(String, String)]
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    @deprecatedOverriding( ... , "2.11.0" )
  122. def toList: List[(String, String)]
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  123. def toMap[T, U](implicit ev: <:<[(String, String), (T, U)]): Map[T, U]
    Definition Classes
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  124. def toParArray: ParArray[T]
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to CollectionsHaveToParArray[PhaseBlockLengthMetric, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (PhaseBlockLengthMetric) ⇒ GenTraversableOnce[T] is in scope.
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  125. def toSeq: Seq[(String, String)]
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  126. def toSet[B >: (String, String)]: Set[B]
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  127. def toStream: Stream[(String, String)]
    Definition Classes
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  128. def toString(): String
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  129. def toTraversable: Traversable[(String, String)]
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    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  130. def toVector: Vector[(String, String)]
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  131. def transpose[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
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    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  132. def unzip[A1, A2](implicit asPair: ((String, String)) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
    Definition Classes
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  133. def unzip3[A1, A2, A3](implicit asTriple: ((String, String)) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
    Definition Classes
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  134. def values: Seq[String]

    Get the values of the arguments in the order they were defined.

    Get the values of the arguments in the order they were defined.

    Definition Classes
    Metric
  135. def view(from: Int, until: Int): IterableView[(String, String), Iterable[(String, String)]]
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  136. def view: IterableView[(String, String), Iterable[(String, String)]]
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  137. final def wait(): Unit
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  138. final def wait(arg0: Long, arg1: Int): Unit
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  139. final def wait(arg0: Long): Unit
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  140. def withFilter(p: ((String, String)) ⇒ Boolean): FilterMonadic[(String, String), Iterable[(String, String)]]
    Definition Classes
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  141. def zip[A1 >: (String, String), B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
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  142. def zipAll[B, A1 >: (String, String), That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
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  143. def zipWithIndex[A1 >: (String, String), That](implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, Int), That]): That
    Definition Classes
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  144. def →[B](y: B): (PhaseBlockLengthMetric, B)
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to ArrowAssoc[PhaseBlockLengthMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
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Shadowed Implicit Value Members

  1. def filter(p: ((String, String)) ⇒ Boolean): TraversableOnce[(String, String)]
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    This member is added by an implicit conversion from PhaseBlockLengthMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
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    Definition Classes
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  2. def flatMap[B](f: ((String, String)) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
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    Definition Classes
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  3. def map[B](f: ((String, String)) ⇒ B): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
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    This implicitly inherited member is shadowed by one or more members in this class.
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  4. def withFilter(p: ((String, String)) ⇒ Boolean): Iterator[(String, String)]
    Implicit
    This member is added by an implicit conversion from PhaseBlockLengthMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (phaseBlockLengthMetric: MonadOps[(String, String)]).withFilter(p)
    Definition Classes
    MonadOps

Inherited from Serializable

Inherited from Serializable

Inherited from Metric

Inherited from Iterable[(String, String)]

Inherited from IterableLike[(String, String), Iterable[(String, String)]]

Inherited from GenIterable[(String, String)]

Inherited from GenIterableLike[(String, String), Iterable[(String, String)]]

Inherited from Traversable[(String, String)]

Inherited from GenTraversable[(String, String)]

Inherited from GenericTraversableTemplate[(String, String), Iterable]

Inherited from TraversableLike[(String, String), Iterable[(String, String)]]

Inherited from GenTraversableLike[(String, String), Iterable[(String, String)]]

Inherited from Parallelizable[(String, String), ParIterable[(String, String)]]

Inherited from TraversableOnce[(String, String)]

Inherited from GenTraversableOnce[(String, String)]

Inherited from FilterMonadic[(String, String), Iterable[(String, String)]]

Inherited from HasNewBuilder[(String, String), Iterable[(String, String)] @scala.annotation.unchecked.uncheckedVariance]

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion MonadOps from PhaseBlockLengthMetric to MonadOps[(String, String)]

Inherited by implicit conversion CollectionsHaveToParArray from PhaseBlockLengthMetric to CollectionsHaveToParArray[PhaseBlockLengthMetric, T]

Inherited by implicit conversion any2stringadd from PhaseBlockLengthMetric to any2stringadd[PhaseBlockLengthMetric]

Inherited by implicit conversion StringFormat from PhaseBlockLengthMetric to StringFormat[PhaseBlockLengthMetric]

Inherited by implicit conversion Ensuring from PhaseBlockLengthMetric to Ensuring[PhaseBlockLengthMetric]

Inherited by implicit conversion ArrowAssoc from PhaseBlockLengthMetric to ArrowAssoc[PhaseBlockLengthMetric]

Inherited by implicit conversion alternateImplicit from PhaseBlockLengthMetric to ForceImplicitAmbiguity

Ungrouped