Instance Constructors

1.  new ConsensusVariantReviewInfo(chrom: String, pos: Int, ref: String, genotype: String, filters: String, A: Int, C: Int, G: Int, T: Int, N: Int, consensus_read: String, consensus_insert: String, consensus_call: String, consensus_qual: Int, a: Int, c: Int, g: Int, t: Int, n: Int)
   chrom

   The chromosome on which the variant exists.

   pos

   The position of the variant.

   ref

   The reference allele at the position.

   genotype

   The genotype of the sample in question.

   filters

   The set of filters applied to the variant in the VCF.

   A

   The count of A observations at the variant locus across all consensus reads.

   C

   The count of C observations at the variant locus across all consensus reads.

   G

   The count of G observations at the variant locus across all consensus reads.

   T

   The count of T observations at the variant locus across all consensus reads.

   N

   The count of N observations at the variant locus across all consensus reads.

   consensus_read

   The consensus read name for which the following fields contain values.

   consensus_insert

   A description of the insert that generated the consensus read.

   consensus_call

   The base call from the consensus read.

   consensus_qual

   The quality score from the consensus read.

   a

   The number of As in raw-reads contributing to the consensus base call at the variant site.

   c

   The number of Cs in raw-reads contributing to the consensus base call at the variant site.

   g

   The number of Gs in raw-reads contributing to the consensus base call at the variant site.

   t

   The number of Ts in raw-reads contributing to the consensus base call at the variant site.

   n

   The number of Ns in raw-reads contributing to the consensus base call at the variant site.