case class BaseCounts(a: Int, c: Int, g: Int, t: Int, n: Int) extends Product with Serializable

Utility class to count the number of observation of each kind of base.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. BaseCounts
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new BaseCounts(a: Int, c: Int, g: Int, t: Int, n: Int)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from BaseCounts to any2stringadd[BaseCounts] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (BaseCounts, B)
    Implicit
    This member is added by an implicit conversion from BaseCounts to ArrowAssoc[BaseCounts] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. val a: Int
  7. def apply(ch: Char): Int

    Returns the number of bases counted of the given base.

    Returns the number of bases counted of the given base. Base must be in [acgtnACGTN].

  8. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  9. val c: Int
  10. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  11. def ensuring(cond: (BaseCounts) ⇒ Boolean, msg: ⇒ Any): BaseCounts
    Implicit
    This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. def ensuring(cond: (BaseCounts) ⇒ Boolean): BaseCounts
    Implicit
    This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  13. def ensuring(cond: Boolean, msg: ⇒ Any): BaseCounts
    Implicit
    This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  14. def ensuring(cond: Boolean): BaseCounts
    Implicit
    This member is added by an implicit conversion from BaseCounts to Ensuring[BaseCounts] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  15. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  16. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from BaseCounts to StringFormat[BaseCounts] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  18. val g: Int
  19. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  20. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  21. val n: Int
  22. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  23. final def notify(): Unit
    Definition Classes
    AnyRef
  24. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  25. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  26. val t: Int
  27. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  28. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. def →[B](y: B): (BaseCounts, B)
    Implicit
    This member is added by an implicit conversion from BaseCounts to ArrowAssoc[BaseCounts] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from BaseCounts to any2stringadd[BaseCounts]

Inherited by implicit conversion StringFormat from BaseCounts to StringFormat[BaseCounts]

Inherited by implicit conversion Ensuring from BaseCounts to Ensuring[BaseCounts]

Inherited by implicit conversion ArrowAssoc from BaseCounts to ArrowAssoc[BaseCounts]

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