Packages

object Mode extends FgBioEnum[Mode]

Enum to represent alignment modes supported by the Aligner.

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  1. Mode
  2. FgBioEnum
  3. Enum
  4. AnyRef
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def apply(name: String): Mode

    The string constructor method that enables us to create the case object instance by name.

    The string constructor method that enables us to create the case object instance by name.

    Definition Classes
    FgBioEnum
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. macro def findValues: IndexedSeq[Mode]
    Attributes
    protected
    Definition Classes
    Enum
  11. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  12. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. def indexOf(member: Mode): Int
    Definition Classes
    Enum
  14. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  15. final lazy val lowerCaseNamesToValuesMap: Map[String, Mode]
    Definition Classes
    Enum
  16. final lazy val namesToValuesMap: Map[String, Mode]
    Definition Classes
    Enum
  17. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  18. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  19. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  20. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  21. def toString(): String
    Definition Classes
    AnyRef → Any
  22. final lazy val upperCaseNameValuesToMap: Map[String, Mode]
    Definition Classes
    Enum
  23. def values: IndexedSeq[Mode]
    Definition Classes
    Mode → Enum
  24. final lazy val valuesToIndex: Map[Mode, Int]
    Definition Classes
    Enum
  25. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  28. def withName(name: String): Mode
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  29. def withNameInsensitive(name: String): Mode
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  30. def withNameInsensitiveOption(name: String): Option[Mode]
    Definition Classes
    Enum
  31. def withNameLowercaseOnly(name: String): Mode
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  32. def withNameLowercaseOnlyOption(name: String): Option[Mode]
    Definition Classes
    Enum
  33. def withNameOption(name: String): Option[Mode]
    Definition Classes
    Enum
  34. def withNameUppercaseOnly(name: String): Mode
    Definition Classes
    Enum
    Annotations
    @SuppressWarnings()
  35. def withNameUppercaseOnlyOption(name: String): Option[Mode]
    Definition Classes
    Enum
  36. object Global extends Mode with Product with Serializable

    Alignment mode for global pairwise alignment.

  37. object Glocal extends Mode with Product with Serializable

    Alignment mode for global alignment of query sequence to local region of target sequence.

  38. object Local extends Mode with Product with Serializable

    Alignment mode for local pairwise alignment.

Inherited from FgBioEnum[Mode]

Inherited from Enum[Mode]

Inherited from AnyRef

Inherited from Any

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