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c

com.fulcrumgenomics.bam.api.SamOrder

TemplateCoordinateKey

case class TemplateCoordinateKey(refIndex1: Int, refIndex2: Int, pos1: Int, pos2: Int, neg1: Boolean, neg2: Boolean, library: String, mid: String, name: String, isUpperOfPair: Boolean) extends Ordered[TemplateCoordinateKey] with Product with Serializable

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Inherited
  1. TemplateCoordinateKey
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Ordered
  7. Comparable
  8. AnyRef
  9. Any
Implicitly
  1. by orderingToOrdered
  2. by any2stringadd
  3. by StringFormat
  4. by Ensuring
  5. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new TemplateCoordinateKey(refIndex1: Int, refIndex2: Int, pos1: Int, pos2: Int, neg1: Boolean, neg2: Boolean, library: String, mid: String, name: String, isUpperOfPair: Boolean)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to any2stringadd[TemplateCoordinateKey] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (TemplateCoordinateKey, B)
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. def <(that: TemplateCoordinateKey): Boolean
    Definition Classes
    Ordered
  6. def <=(that: TemplateCoordinateKey): Boolean
    Definition Classes
    Ordered
  7. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def >(that: TemplateCoordinateKey): Boolean
    Definition Classes
    Ordered
  9. def >=(that: TemplateCoordinateKey): Boolean
    Definition Classes
    Ordered
  10. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  11. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  12. def compare(that: TemplateCoordinateKey): Int
    Definition Classes
    TemplateCoordinateKey → Ordered
  13. def compareTo(that: TemplateCoordinateKey): Int
    Definition Classes
    Ordered → Comparable
  14. def ensuring(cond: (TemplateCoordinateKey) ⇒ Boolean, msg: ⇒ Any): TemplateCoordinateKey
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  15. def ensuring(cond: (TemplateCoordinateKey) ⇒ Boolean): TemplateCoordinateKey
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  16. def ensuring(cond: Boolean, msg: ⇒ Any): TemplateCoordinateKey
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  17. def ensuring(cond: Boolean): TemplateCoordinateKey
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  18. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  19. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  20. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to StringFormat[TemplateCoordinateKey] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  21. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  22. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  23. val isUpperOfPair: Boolean
  24. val library: String
  25. val mid: String
  26. val name: String
  27. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  28. val neg1: Boolean
  29. val neg2: Boolean
  30. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  31. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  32. val pos1: Int
  33. val pos2: Int
  34. val refIndex1: Int
  35. val refIndex2: Int
  36. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  37. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  39. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  40. def [B](y: B): (TemplateCoordinateKey, B)
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def <(that: TemplateCoordinateKey): Boolean
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).<(that)
    Definition Classes
    Ordered
  2. def <=(that: TemplateCoordinateKey): Boolean
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).<=(that)
    Definition Classes
    Ordered
  3. def >(that: TemplateCoordinateKey): Boolean
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).>(that)
    Definition Classes
    Ordered
  4. def >=(that: TemplateCoordinateKey): Boolean
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).>=(that)
    Definition Classes
    Ordered
  5. def compare(that: TemplateCoordinateKey): Int
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).compare(that)
    Definition Classes
    Ordered
  6. def compareTo(that: TemplateCoordinateKey): Int
    Implicit
    This member is added by an implicit conversion from TemplateCoordinateKey to Ordered[TemplateCoordinateKey] performed by method orderingToOrdered in scala.math.Ordered. This conversion will take place only if an implicit value of type Ordering[TemplateCoordinateKey] is in scope.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (templateCoordinateKey: Ordered[TemplateCoordinateKey]).compareTo(that)
    Definition Classes
    Ordered → Comparable

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Ordered[TemplateCoordinateKey]

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion orderingToOrdered from TemplateCoordinateKey to Ordered[TemplateCoordinateKey]

Inherited by implicit conversion any2stringadd from TemplateCoordinateKey to any2stringadd[TemplateCoordinateKey]

Inherited by implicit conversion StringFormat from TemplateCoordinateKey to StringFormat[TemplateCoordinateKey]

Inherited by implicit conversion Ensuring from TemplateCoordinateKey to Ensuring[TemplateCoordinateKey]

Inherited by implicit conversion ArrowAssoc from TemplateCoordinateKey to ArrowAssoc[TemplateCoordinateKey]

Ungrouped