object ConsensusTags
Object that encapsulates the various consensus related tags that are added to consensus reads at both the per-read and per-base level.
Currently only contains tags for single-strand consensus reads, but with a view to using the following names for consistency if/when we add duplex calling: Value AB BA Final --------------------- -- -- ----- per-read-depth aD bD cD per-read-min-depth aM bM cM per-read-error-rate aE bE cE per-base-depth ad bd cd per-base-error-count ae be ce per-base-bases ac bc bases per-base-quals aq bq quals The second letter in the tag is lower case if it is per-base, upper case if it is per-read.
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val
MolecularId: String
Post-grouping ID that is file-wide unique per source molecule.
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val
OriginalUmiBases: String
The field in which the original UMI bases are stored post-correction.
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val
UmiBases: String
The default field in which to look for UMI sequences.
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- object PerBase
- object PerRead