object PerBase
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val
AbConsensusBases: String
The single-stranded consensus from the AB raw reads.
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val
AbConsensusQuals: String
The phred-scaled qualities, as phred-33 ascii values, of the single-stranded consensus from the AB raw reads.
- val AbRawReadCount: String
- val AbRawReadErrors: String
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val
AllPerBaseTags: Seq[String]
The set of all per-base tags.
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val
BaConsensusBases: String
The single-stranded consensus from the BA raw reads.
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val
BaConsensusQuals: String
The phred-scaled qualities, as phred-33 ascii values, of the single-stranded consensus from the BA raw reads.
- val BaRawReadCount: String
- val BaRawReadErrors: String
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val
RawReadCount: String
The per-base number of raw-reads contributing to the consensus (stored as a short[]).
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val
RawReadErrors: String
The number of bases at each position that disagreed with the final consensus call (stored as a short[]).
The number of bases at each position that disagreed with the final consensus call (stored as a short[]). If the final consensus call is a no call (N), then we use the most likely consensus base instead of the final call.
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val
TagsToReverse: Seq[String]
The set of the per-base tags produced by the consensus caller that need to be reversed after alignment.
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val
TagsToReverseComplement: Seq[String]
The set of the per-base tags produced by the consensus caller that need to be reverse complemented after alignment.
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