Class

nl.biopet.utils.rscript

LinePlot

Related Doc: package rscript

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case class LinePlot(input: File, output: File, width: Int = 1200, height: Int = 1200, xlabel: Option[String] = None, ylabel: Option[String] = None, llabel: Option[String] = None, title: Option[String] = None, hideLegend: Boolean = false, removeZero: Boolean = false, xLog10: Boolean = false, yLog10: Boolean = false, xLog10AxisTicks: Seq[String] = Seq(), xLog10AxisLabels: Seq[String] = Seq()) extends Rscript with Product with Serializable

Extension for en general line plot with R

Created by pjvan_thof on 4/29/15.

Linear Supertypes
Serializable, Serializable, Product, Equals, Rscript, Logging, AnyRef, Any
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Inherited
  1. LinePlot
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Rscript
  7. Logging
  8. AnyRef
  9. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new LinePlot(input: File, output: File, width: Int = 1200, height: Int = 1200, xlabel: Option[String] = None, ylabel: Option[String] = None, llabel: Option[String] = None, title: Option[String] = None, hideLegend: Boolean = false, removeZero: Boolean = false, xLog10: Boolean = false, yLog10: Boolean = false, xLog10AxisTicks: Seq[String] = Seq(), xLog10AxisLabels: Seq[String] = Seq())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. def cmd: Seq[String]

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    This is the default implementation, to add arguments override this

    This is the default implementation, to add arguments override this

    Definition Classes
    LinePlot → Rscript

  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  10. val height: Int

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  11. val hideLegend: Boolean

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  12. val input: File

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  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  14. val llabel: Option[String]

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  15. def logger: Logger

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    returns

    Global biopet logger

    Definition Classes
    Logging

  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. val output: File

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  20. val removeZero: Boolean

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  21. def rscriptExecutable: String

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    Attributes
    protected
    Definition Classes
    Rscript

  22. def runLocal()(implicit ec: ExecutionContext): Unit

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    Execute rscript on local system Stdout and stderr will go to biopet logger

    Execute rscript on local system Stdout and stderr will go to biopet logger

    Definition Classes
    Rscript

  23. def runLocal(logger: ProcessLogger)(implicit ec: ExecutionContext): Unit

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    Execute rscript on local system

    Execute rscript on local system

    logger

    How to handle stdout and stderr

    Definition Classes
    Rscript

  24. def scriptPath: String

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    Attributes
    protected
    Definition Classes
    LinePlot → Rscript

  25. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  26. val title: Option[String]

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  27. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  28. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  29. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. val width: Int

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  31. val xLog10: Boolean

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  32. val xLog10AxisLabels: Seq[String]

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  33. val xLog10AxisTicks: Seq[String]

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  34. val xlabel: Option[String]

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  35. val yLog10: Boolean

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  36. val ylabel: Option[String]

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Rscript

Inherited from Logging

Inherited from AnyRef

Inherited from Any

Ungrouped