Trait/Object

nl.biopet.utils.rscript

Rscript

Related Docs: object Rscript | package rscript

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trait Rscript extends Logging

Trait for rscripts, can be used to execute rscripts locally

Created by pjvanthof on 13/09/15.

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Logging, AnyRef, Any
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Abstract Value Members

  1. abstract def scriptPath: String

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    Attributes
    protected

Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
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    AnyRef
    Annotations
    @throws( ... )
  6. def cmd: Seq[String]

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    This is the default implementation, to add arguments override this

  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. final def isInstanceOf[T0]: Boolean

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  13. def logger: Logger

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    returns

    Global biopet logger

    Definition Classes
    Logging
  14. final def ne(arg0: AnyRef): Boolean

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  15. final def notify(): Unit

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    AnyRef
  16. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  17. def rscriptExecutable: String

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    Attributes
    protected
  18. def runLocal()(implicit ec: ExecutionContext): Unit

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    Execute rscript on local system Stdout and stderr will go to biopet logger

  19. def runLocal(logger: ProcessLogger)(implicit ec: ExecutionContext): Unit

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    Execute rscript on local system

    Execute rscript on local system

    logger

    How to handle stdout and stderr

  20. final def synchronized[T0](arg0: ⇒ T0): T0

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  21. def toString(): String

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  22. final def wait(): Unit

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    @throws( ... )
  23. final def wait(arg0: Long, arg1: Int): Unit

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  24. final def wait(arg0: Long): Unit

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Inherited from Logging

Inherited from AnyRef

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