smile.gap

Class BitString

java.lang.Object

smile.gap.BitString

All Implemented Interfaces:

java.lang.Comparable<Chromosome>, Chromosome

public class BitString
extends java.lang.Object
implements Chromosome

The standard bit string representation of the solution domain. Here are some general guides on parameter setting.

Crossover rate determines how often will be crossover performed. If there is no crossover, offspring is exact copy of parents. If there is a crossover, offspring is made from parts of parents' chromosome. If crossover rate is 100%, then all offspring is made by crossover. If it is 0%, whole new generation is made from exact copies of chromosomes from old population. However, it this does not mean that the new generation is the same because of mutation. Crossover is made in hope that new chromosomes will have good parts of old chromosomes and maybe the new chromosomes will be better. However it is good to leave some part of population survive to next generation. Crossover rate generally should be high, about 80% - 95%. However some results show that for some problems crossover rate about 60% is the best.

Mutation rate determines how often will be parts of chromosome mutated. If there is no mutation, offspring is taken after crossover (or copy) without any change. If mutation is performed, part of chromosome is changed. Mutation is made to prevent falling GA into local extreme, but it should not occur very often, because then GA will in fact change to random search. Best rates reported are about 0.5% - 1%.

Field Summary

Fields

Modifier and Type	Field and Description
int	length The length of chromosome.

Constructor Summary

Constructors

Constructor and Description
BitString(byte[] bits, FitnessMeasure<BitString> measure) Constructor.
BitString(byte[] bits, FitnessMeasure<BitString> measure, Crossover crossover, double crossoverRate, double mutationRate) Constructor.
BitString(int length, FitnessMeasure<BitString> measure) Constructor.
BitString(int length, FitnessMeasure<BitString> measure, Crossover crossover, double crossoverRate, double mutationRate) Constructor.

Method Summary

Modifier and Type	Method and Description
byte[]	bits() Returns the bit string of chromosome.
int	compareTo(Chromosome o)
BitString[]	crossover(Chromosome another) Returns a pair of offsprings by crossovering this one with another one according to the crossover rate, which determines how often will be crossover performed.
double	fitness() Returns the fitness of chromosome.
int	length() Returns the length of bit string.
void	mutate() For genetic algorithms, this method mutates the chromosome randomly.
BitString	newInstance() Returns a new random instance.
BitString	newInstance(byte[] bits) Creates a new instance with given bits.
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

length

public final int length

The length of chromosome.

Constructor Detail

BitString

public BitString(int length,
                 FitnessMeasure<BitString> measure)

Constructor. Two point cross over, cross over rate 0.9, mutation rate 0.01.

Parameters:

length - the length of bit string.

measure - the fitness measure.

BitString

public BitString(int length,
                 FitnessMeasure<BitString> measure,
                 Crossover crossover,
                 double crossoverRate,
                 double mutationRate)

Constructor.

Parameters:

length - the length of bit string.

measure - the fitness measure.

crossover - the strategy of crossover operation.

crossoverRate - the crossover rate.

mutationRate - the mutation rate.

BitString

public BitString(byte[] bits,
                 FitnessMeasure<BitString> measure)

Constructor. Two point cross over, cross over rate 0.9, mutation rate 0.01.

Parameters:

bits - the bit string of chromosome.

measure - the fitness measure.

BitString

public BitString(byte[] bits,
                 FitnessMeasure<BitString> measure,
                 Crossover crossover,
                 double crossoverRate,
                 double mutationRate)

Constructor.

Parameters:

bits - the bit string of chromosome.

measure - the fitness measure.

crossover - the strategy of crossover operation.

crossoverRate - the crossover rate.

mutationRate - the mutation rate.

Method Detail

length

public int length()

Returns the length of bit string.

bits

public byte[] bits()

Returns the bit string of chromosome.

compareTo

public int compareTo(Chromosome o)

Specified by:

compareTo in interface java.lang.Comparable<Chromosome>

fitness

public double fitness()

Description copied from interface: Chromosome

Returns the fitness of chromosome.

Specified by:

fitness in interface Chromosome

newInstance

public BitString newInstance()

Description copied from interface: Chromosome

Returns a new random instance.

Specified by:

newInstance in interface Chromosome

newInstance

public BitString newInstance(byte[] bits)

Creates a new instance with given bits.

crossover

public BitString[] crossover(Chromosome another)

Description copied from interface: Chromosome

Returns a pair of offsprings by crossovering this one with another one according to the crossover rate, which determines how often will be crossover performed. If there is no crossover, offspring is exact copy of parents. Various crossover strategies can be employed.

Specified by:

crossover in interface Chromosome

mutate

public void mutate()

Description copied from interface: Chromosome

For genetic algorithms, this method mutates the chromosome randomly. The offspring may have no changes since the mutation rate is usually very low. For Lamarckian algorithms, this method actually does the local search such as such as hill-climbing.

Specified by:

mutate in interface Chromosome

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object