smile.regression

Class GaussianProcessRegression

java.lang.Object

smile.regression.GaussianProcessRegression

public class GaussianProcessRegression
extends java.lang.Object

Gaussian Process for Regression. A Gaussian process is a stochastic process whose realizations consist of random values associated with every point in a range of times (or of space) such that each such random variable has a normal distribution. Moreover, every finite collection of those random variables has a multivariate normal distribution.

A Gaussian process can be used as a prior probability distribution over functions in Bayesian inference. Given any set of N points in the desired domain of your functions, take a multivariate Gaussian whose covariance matrix parameter is the Gram matrix of N points with some desired kernel, and sample from that Gaussian. Inference of continuous values with a Gaussian process prior is known as Gaussian process regression.

The fitting is performed in the reproducing kernel Hilbert space with the "kernel trick". The loss function is squared-error. This also arises as the kriging estimate of a Gaussian random field in spatial statistics.

A significant problem with Gaussian process prediction is that it typically scales as O(n³). For large problems (e.g. n > 10,000) both storing the Gram matrix and solving the associated linear systems are prohibitive on modern workstations. An extensive range of proposals have been suggested to deal with this problem. A popular approach is the reduced-rank Approximations of the Gram Matrix, known as Nystrom approximation. Greedy approximation is another popular approach that uses an active set of training points of size m selected from the training set of size n > m. We assume that it is impossible to search for the optimal subset of size m due to combinatorics. The points in the active set could be selected randomly, but in general we might expect better performance if the points are selected greedily w.r.t. some criterion. Recently, researchers had proposed relaxing the constraint that the inducing variables must be a subset of training/test cases, turning the discrete selection problem into one of continuous optimization.

References

1. Carl Edward Rasmussen and Chris Williams. Gaussian Processes for Machine Learning, 2006.
2. Joaquin Quinonero-candela, Carl Edward Ramussen, Christopher K. I. Williams. Approximation Methods for Gaussian Process Regression. 2007.
3. T. Poggio and F. Girosi. Networks for approximation and learning. Proc. IEEE 78(9):1484-1487, 1990.
4. Kai Zhang and James T. Kwok. Clustered Nystrom Method for Large Scale Manifold Learning and Dimension Reduction. IEEE Transactions on Neural Networks, 2010.

Constructor Summary

Constructors

Constructor and Description
GaussianProcessRegression()

Method Summary

Modifier and Type	Method and Description
static <T> KernelMachine<T>	fit(T[] x, double[] y, smile.math.kernel.MercerKernel<T> kernel, double lambda) Fits a regular Gaussian process model.
static <T> KernelMachine<T>	fit(T[] x, double[] y, T[] t, smile.math.kernel.MercerKernel<T> kernel, double lambda) Fits an approximate Gaussian process model by the method of subset of regressors.
static <T> KernelMachine<T>	nystrom(T[] x, double[] y, T[] t, smile.math.kernel.MercerKernel<T> kernel, double lambda) Fits an approximate Gaussian process model with Nystrom approximation of kernel matrix.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GaussianProcessRegression

public GaussianProcessRegression()

Method Detail

fit

public static <T> KernelMachine<T> fit(T[] x,
                                       double[] y,
                                       smile.math.kernel.MercerKernel<T> kernel,
                                       double lambda)

Fits a regular Gaussian process model.

Parameters:

x - the training dataset.

y - the response variable.

kernel - the Mercer kernel.

lambda - the shrinkage/regularization parameter.

fit

public static <T> KernelMachine<T> fit(T[] x,
                                       double[] y,
                                       T[] t,
                                       smile.math.kernel.MercerKernel<T> kernel,
                                       double lambda)

Fits an approximate Gaussian process model by the method of subset of regressors.

Parameters:

x - the training dataset.

y - the response variable.

t - the inducing input, which are pre-selected or inducing samples acting as active set of regressors. In simple case, these can be chosen randomly from the training set or as the centers of k-means clustering.

kernel - the Mercer kernel.

lambda - the shrinkage/regularization parameter.

nystrom

public static <T> KernelMachine<T> nystrom(T[] x,
                                           double[] y,
                                           T[] t,
                                           smile.math.kernel.MercerKernel<T> kernel,
                                           double lambda)

Fits an approximate Gaussian process model with Nystrom approximation of kernel matrix.

Parameters:

x - the training dataset.

y - the response variable.

t - the inducing input for Nystrom approximation. Commonly, these can be chosen as the centers of k-means clustering.

kernel - the Mercer kernel.

lambda - the shrinkage/regularization parameter.