htsjdk.samtools

Enum SQTagUtil.SQBase

java.lang.Object

java.lang.Enum<SQTagUtil.SQBase>

htsjdk.samtools.SQTagUtil.SQBase

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<SQTagUtil.SQBase>

Enclosing class:

SQTagUtil

public static enum SQTagUtil.SQBase
extends java.lang.Enum<SQTagUtil.SQBase>

The ordinals of these are stored in the high-order 2 bits of each byte of the SQ tag. Note that these have the convenient property that the binary complement of each ordinal, masked to the two low-order bits, is the complementary base.

Enum Constant Summary

Enum Constants

Enum Constant and Description
SQ_A
SQ_C
SQ_G
SQ_T

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.Character	getBase()
static SQTagUtil.SQBase	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static SQTagUtil.SQBase[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

SQ_A

public static final SQTagUtil.SQBase SQ_A

SQ_C

public static final SQTagUtil.SQBase SQ_C

SQ_G

public static final SQTagUtil.SQBase SQ_G

SQ_T

public static final SQTagUtil.SQBase SQ_T

Method Detail

values

public static SQTagUtil.SQBase[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (SQTagUtil.SQBase c : SQTagUtil.SQBase.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static SQTagUtil.SQBase valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

getBase

public java.lang.Character getBase()