htsjdk.samtools.cram.mask

Class RefMaskUtils.RefMask

java.lang.Object

htsjdk.samtools.cram.mask.RefMaskUtils.RefMask

Enclosing class:

RefMaskUtils

public static class RefMaskUtils.RefMask
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
RefMaskUtils.RefMask(int len, int minHits)

Method Summary

Methods

Modifier and Type	Method and Description
void	addReadBase(int pos, byte readBase, byte refBase)
int	getMinHits()
void	setMinHits(int minHits)
boolean	shouldStore(int pos, byte refBase)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RefMaskUtils.RefMask

public RefMaskUtils.RefMask(int len,
                    int minHits)

Method Detail

addReadBase

public void addReadBase(int pos,
               byte readBase,
               byte refBase)

shouldStore

public boolean shouldStore(int pos,
                  byte refBase)

getMinHits

public int getMinHits()

setMinHits

public void setMinHits(int minHits)