htsjdk.samtools.cram.encoding

Interface Encoding<T>

All Known Implementing Classes:

BetaIntegerEncoding, ByteArrayLenEncoding, ByteArrayStopEncoding, ExternalByteArrayEncoding, ExternalByteEncoding, ExternalIntegerEncoding, ExternalLongEncoding, GammaIntegerEncoding, GolombIntegerEncoding, GolombLongEncoding, GolombRiceIntegerEncoding, HuffmanByteEncoding, HuffmanEncoding, HuffmanIntegerEncoding, NullEncoding, SubexpIntegerEncoding, UnaryIntegerEncoding

public interface Encoding<T>

Method Summary

Methods

Modifier and Type	Method and Description
BitCodec<T>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()

Method Detail

id

EncodingID id()

toByteArray

byte[] toByteArray()

fromByteArray

void fromByteArray(byte[] data)

buildCodec

BitCodec<T> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                     java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)