htsjdk.samtools

Enum ValidationStringency

java.lang.Object

java.lang.Enum<ValidationStringency>

htsjdk.samtools.ValidationStringency

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<ValidationStringency>

public enum ValidationStringency
extends java.lang.Enum<ValidationStringency>

How strict to be when reading a SAM or BAM, beyond bare minimum validation.

Enum Constant Summary

Enum Constants

Enum Constant and Description
LENIENT Emit warnings but keep going if possible.
SILENT Like LENIENT, only don't emit warning messages.
STRICT Do the right thing, throw an exception if something looks wrong.

Field Summary

Fields

Modifier and Type	Field and Description
static ValidationStringency	DEFAULT_STRINGENCY

Method Summary

Methods

Modifier and Type	Method and Description
static ValidationStringency	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static ValidationStringency[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

STRICT

public static final ValidationStringency STRICT

Do the right thing, throw an exception if something looks wrong.

LENIENT

public static final ValidationStringency LENIENT

Emit warnings but keep going if possible.

SILENT

public static final ValidationStringency SILENT

Like LENIENT, only don't emit warning messages.

Field Detail

DEFAULT_STRINGENCY

public static final ValidationStringency DEFAULT_STRINGENCY

Method Detail

values

public static ValidationStringency[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ValidationStringency c : ValidationStringency.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ValidationStringency valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null