htsjdk.samtools.cram.encoding

Class ByteArrayStopEncoding.ByteArrayStopCodec

java.lang.Object

htsjdk.samtools.cram.encoding.AbstractBitCodec<byte[]>

htsjdk.samtools.cram.encoding.ByteArrayStopEncoding.ByteArrayStopCodec

All Implemented Interfaces:

BitCodec<byte[]>

Enclosing class:

ByteArrayStopEncoding

public static class ByteArrayStopEncoding.ByteArrayStopCodec
extends AbstractBitCodec<byte[]>

Constructor Summary

Constructors

Constructor and Description
ByteArrayStopEncoding.ByteArrayStopCodec(byte stopByte, java.io.InputStream is, java.io.OutputStream os)

Method Summary

Methods

Modifier and Type	Method and Description
long	numberOfBits(byte[] object)
byte[]	read(BitInputStream bis)
byte[]	read(BitInputStream bis, int len)
long	write(BitOutputStream bos, byte[] object)

Methods inherited from class htsjdk.samtools.cram.encoding.AbstractBitCodec

readInto, skip, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ByteArrayStopEncoding.ByteArrayStopCodec

public ByteArrayStopEncoding.ByteArrayStopCodec(byte stopByte,
                                        java.io.InputStream is,
                                        java.io.OutputStream os)

Method Detail

read

public byte[] read(BitInputStream bis)
            throws java.io.IOException

Specified by:

read in interface BitCodec<byte[]>

Specified by:

read in class AbstractBitCodec<byte[]>

Throws:

java.io.IOException

read

public byte[] read(BitInputStream bis,
          int len)
            throws java.io.IOException

Specified by:

read in interface BitCodec<byte[]>

Specified by:

read in class AbstractBitCodec<byte[]>

Throws:

java.io.IOException

write

public long write(BitOutputStream bos,
         byte[] object)
           throws java.io.IOException

Specified by:

write in interface BitCodec<byte[]>

Specified by:

write in class AbstractBitCodec<byte[]>

Throws:

java.io.IOException

numberOfBits

public long numberOfBits(byte[] object)

Specified by:

numberOfBits in interface BitCodec<byte[]>

Specified by:

numberOfBits in class AbstractBitCodec<byte[]>