htsjdk.samtools.cram.encoding

Class ExternalByteArrayEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.ExternalByteArrayEncoding

All Implemented Interfaces:

Encoding<byte[]>

public class ExternalByteArrayEncoding
extends java.lang.Object
implements Encoding<byte[]>

Field Summary

Fields

Modifier and Type	Field and Description
int	contentId
static EncodingID	encodingId

Constructor Summary

Constructors

Constructor and Description
ExternalByteArrayEncoding()

Method Summary

Methods

Modifier and Type	Method and Description
BitCodec<byte[]>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int contentId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

encodingId

public static final EncodingID encodingId

contentId

public int contentId

Constructor Detail

ExternalByteArrayEncoding

public ExternalByteArrayEncoding()

Method Detail

toParam

public static EncodingParams toParam(int contentId)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<byte[]>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<byte[]>

buildCodec

public BitCodec<byte[]> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                          java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<byte[]>

id

public EncodingID id()

Specified by:

id in interface Encoding<byte[]>