htsjdk.samtools.cram.encoding

Class ExternalIntegerCodec

java.lang.Object

htsjdk.samtools.cram.encoding.AbstractBitCodec<java.lang.Integer>

htsjdk.samtools.cram.encoding.ExternalIntegerCodec

All Implemented Interfaces:

BitCodec<java.lang.Integer>

public class ExternalIntegerCodec
extends AbstractBitCodec<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
ExternalIntegerCodec(java.io.OutputStream os, java.io.InputStream is)

Method Summary

Methods

Modifier and Type	Method and Description
long	numberOfBits(java.lang.Integer value)
java.lang.Integer	read(BitInputStream bis)
java.lang.Integer	read(BitInputStream bis, int len)
long	write(BitOutputStream bos, java.lang.Integer value)

Methods inherited from class htsjdk.samtools.cram.encoding.AbstractBitCodec

readInto, skip, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExternalIntegerCodec

public ExternalIntegerCodec(java.io.OutputStream os,
                    java.io.InputStream is)

Method Detail

read

public java.lang.Integer read(BitInputStream bis)
                       throws java.io.IOException

Specified by:

read in interface BitCodec<java.lang.Integer>

Specified by:

read in class AbstractBitCodec<java.lang.Integer>

Throws:

java.io.IOException

write

public long write(BitOutputStream bos,
         java.lang.Integer value)
           throws java.io.IOException

Specified by:

write in interface BitCodec<java.lang.Integer>

Specified by:

write in class AbstractBitCodec<java.lang.Integer>

Throws:

java.io.IOException

numberOfBits

public long numberOfBits(java.lang.Integer value)

Specified by:

numberOfBits in interface BitCodec<java.lang.Integer>

Specified by:

numberOfBits in class AbstractBitCodec<java.lang.Integer>

read

public java.lang.Integer read(BitInputStream bis,
                     int len)
                       throws java.io.IOException

Specified by:

read in interface BitCodec<java.lang.Integer>

Specified by:

read in class AbstractBitCodec<java.lang.Integer>

Throws:

java.io.IOException