htsjdk.samtools.cram.build

Class CramContainerIterator

java.lang.Object

htsjdk.samtools.cram.build.CramContainerIterator

All Implemented Interfaces:

java.util.Iterator<Container>

public class CramContainerIterator
extends java.lang.Object
implements java.util.Iterator<Container>

An iterator of CRAM containers read from an InputStream.

Constructor Summary

Constructors

Constructor and Description
CramContainerIterator(java.io.InputStream inputStream)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
CramHeader	getCramHeader()
boolean	hasNext()
Container	next()
void	remove()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CramContainerIterator

public CramContainerIterator(java.io.InputStream inputStream)
                      throws java.io.IOException

Throws:

java.io.IOException

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in interface java.util.Iterator<Container>

next

public Container next()

Specified by:

next in interface java.util.Iterator<Container>

remove

public void remove()

Specified by:

remove in interface java.util.Iterator<Container>

getCramHeader

public CramHeader getCramHeader()

close

public void close()