htsjdk.samtools.cram.build

Class ContainerParser

java.lang.Object

htsjdk.samtools.cram.build.ContainerParser

public class ContainerParser
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ContainerParser(SAMFileHeader samFileHeader)

Method Summary

Modifier and Type	Method and Description
java.util.List<CramCompressionRecord>	getRecords(Container container, java.util.ArrayList<CramCompressionRecord> records, ValidationStringency validationStringency)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ContainerParser

public ContainerParser(SAMFileHeader samFileHeader)

Method Detail

getRecords

public java.util.List<CramCompressionRecord> getRecords(Container container,
                                                        java.util.ArrayList<CramCompressionRecord> records,
                                                        ValidationStringency validationStringency)
                                                 throws java.lang.IllegalArgumentException,
                                                        java.lang.IllegalAccessException

Throws:

java.lang.IllegalArgumentException

java.lang.IllegalAccessException