htsjdk.samtools.cram.encoding.external

Class ExternalByteArrayCodec

java.lang.Object

htsjdk.samtools.cram.encoding.external.ExternalCodec<byte[]>

htsjdk.samtools.cram.encoding.external.ExternalByteArrayCodec

All Implemented Interfaces:

CRAMCodec<byte[]>

public class ExternalByteArrayCodec
extends ExternalCodec<byte[]>

Encode Byte Arrays using an External Data Block

Field Summary

Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalCodec

inputStream, outputStream

Constructor Summary

Constructors

Constructor and Description
ExternalByteArrayCodec(java.io.ByteArrayInputStream inputStream, java.io.ByteArrayOutputStream outputStream) Construct an External Codec for Byte Arrays

Method Summary

Modifier and Type	Method and Description
byte[]	read() Read a single object from the stream
byte[]	read(int length) Read a array of specified length from the stream
void	write(byte[] object) Write an object to the stream

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExternalByteArrayCodec

public ExternalByteArrayCodec(java.io.ByteArrayInputStream inputStream,
                              java.io.ByteArrayOutputStream outputStream)

Construct an External Codec for Byte Arrays

Parameters:

inputStream - the input bytestream to read from

outputStream - the output bytestream to write to

Method Detail

read

public byte[] read(int length)

Description copied from interface: CRAMCodec

Read a array of specified length from the stream

Parameters:

length - the number of elements to read

Returns:

an object from the stream

write

public void write(byte[] object)

Description copied from interface: CRAMCodec

Write an object to the stream

Parameters:

object - the object to write

read

public byte[] read()

Description copied from interface: CRAMCodec

Read a single object from the stream

Returns:

an object from the stream