htsjdk.samtools.cram.encoding.external

Class ExternalLongEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.CRAMEncoding<T>

htsjdk.samtools.cram.encoding.external.ExternalEncoding<java.lang.Long>

htsjdk.samtools.cram.encoding.external.ExternalLongEncoding

public final class ExternalLongEncoding
extends ExternalEncoding<java.lang.Long>

Field Summary

Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding

externalBlockContentId

Constructor Summary

Constructors

Constructor and Description
ExternalLongEncoding(int externalBlockContentId)

Method Summary

Modifier and Type	Method and Description
CRAMCodec<java.lang.Long>	buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams) Instantiate the codec represented by this encoding by supplying it with the appropriate streams
static ExternalLongEncoding	fromSerializedEncodingParams(byte[] serializedParams) Create a new instance of this encoding using the (ITF8 encoded) serializedParams.

Methods inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding

toSerializedEncodingParams, toString

Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding

buildReadCodec, buildWriteCodec, id, toEncodingDescriptor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ExternalLongEncoding

public ExternalLongEncoding(int externalBlockContentId)

Method Detail

fromSerializedEncodingParams

public static ExternalLongEncoding fromSerializedEncodingParams(byte[] serializedParams)

Create a new instance of this encoding using the (ITF8 encoded) serializedParams.

Parameters:

serializedParams -

Returns:

ExternalLongEncoding with parameters populated from serializedParams

buildCodec

public CRAMCodec<java.lang.Long> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams,
                                            SliceBlocksWriteStreams sliceBlocksWriteStreams)

Description copied from class: CRAMEncoding

Instantiate the codec represented by this encoding by supplying it with the appropriate streams

Specified by:

buildCodec in class CRAMEncoding<java.lang.Long>

Parameters:

sliceBlocksReadStreams - the core block bit stream a CoreCodec will read from

sliceBlocksWriteStreams - the core block bit stream a CoreCodec will write to

Returns:

a newly instantiated codec