htsjdk.samtools.cram.encoding.reader

Class DataSeriesReader<T>

java.lang.Object

htsjdk.samtools.cram.encoding.reader.DataSeriesReader<T>

Type Parameters:

T - data type of the series to be read.

public final class DataSeriesReader<T>
extends java.lang.Object

A CRAM Data Series reader for a particular (Encoding, DataSeriesType) and associated parameters

Constructor Summary

Constructors

Constructor and Description
DataSeriesReader(DataSeriesType valueType, EncodingDescriptor encodingDescriptor, SliceBlocksReadStreams sliceBlocksReadStreams) Initialize a Data Series reader

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataSeriesReader

public DataSeriesReader(DataSeriesType valueType,
                        EncodingDescriptor encodingDescriptor,
                        SliceBlocksReadStreams sliceBlocksReadStreams)

Initialize a Data Series reader

Parameters:

valueType - type of the data to read

encodingDescriptor - encoding-specific parameters

sliceBlocksReadStreams - each DataSeries object uses its encoding descriptor/id to choose the stream to consume from amongst the various streams in the SliceBlocksReadStreams