htsjdk.samtools.util

Class CustomGzipOutputStream

java.lang.Object

java.io.OutputStream

java.io.FilterOutputStream

java.util.zip.DeflaterOutputStream

java.util.zip.GZIPOutputStream

htsjdk.samtools.util.CustomGzipOutputStream

All Implemented Interfaces:

java.io.Closeable, java.io.Flushable, java.lang.AutoCloseable

public class CustomGzipOutputStream
extends java.util.zip.GZIPOutputStream

Hacky little class used to allow us to set the compression level on a GZIP output stream which, for some bizarre reason, is not exposed in the standard API.

Field Summary

Fields inherited from class java.util.zip.GZIPOutputStream

crc

Fields inherited from class java.util.zip.DeflaterOutputStream

buf, def

Fields inherited from class java.io.FilterOutputStream

out

Constructor Summary

Constructors

Constructor and Description
CustomGzipOutputStream(java.io.OutputStream outputStream, int compressionLevel)
CustomGzipOutputStream(java.io.OutputStream outputStream, int bufferSize, int compressionLevel)

Method Summary

Methods inherited from class java.util.zip.GZIPOutputStream

finish, write

Methods inherited from class java.util.zip.DeflaterOutputStream

close, deflate, flush, write

Methods inherited from class java.io.FilterOutputStream

write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CustomGzipOutputStream

public CustomGzipOutputStream(java.io.OutputStream outputStream,
                              int bufferSize,
                              int compressionLevel)
                       throws java.io.IOException

Throws:

java.io.IOException

CustomGzipOutputStream

public CustomGzipOutputStream(java.io.OutputStream outputStream,
                              int compressionLevel)
                       throws java.io.IOException

Throws:

java.io.IOException