htsjdk.beta.codecs.variants.vcf.vcfv4_2

Class VCFEncoderV4_2

java.lang.Object

htsjdk.beta.codecs.variants.vcf.VCFEncoder

htsjdk.beta.codecs.variants.vcf.vcfv4_2.VCFEncoderV4_2

All Implemented Interfaces:

HtsEncoder<VCFHeader,VariantContext>, VariantsEncoder, java.io.Closeable, java.lang.AutoCloseable

public class VCFEncoderV4_2
extends VCFEncoder

VCF V4.2 encoder.

Constructor Summary

Constructors

Constructor and Description
VCFEncoderV4_2(Bundle outputBundle, VariantsEncoderOptions variantsEncoderOptions) Create a new VCF V4.2 encoder.

Method Summary

Modifier and Type	Method and Description
HtsVersion	getVersion() Get the version of the file format supported by this encoder.

Methods inherited from class htsjdk.beta.codecs.variants.vcf.VCFEncoder

close, getDisplayName, getFileFormat, getOutputBundle, getVariantsEncoderOptions, setHeader, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VCFEncoderV4_2

public VCFEncoderV4_2(Bundle outputBundle,
                      VariantsEncoderOptions variantsEncoderOptions)

Create a new VCF V4.2 encoder.

Parameters:

outputBundle - the output Bundle to encoder

variantsEncoderOptions - the VariantsEncoderOptions to use

Method Detail

getVersion

public HtsVersion getVersion()

Description copied from interface: HtsEncoder

Get the version of the file format supported by this encoder.