htsjdk.samtools.util

Class IntervalList.IntervalMergerIterator

java.lang.Object

htsjdk.samtools.util.IntervalList.IntervalMergerIterator

All Implemented Interfaces:

java.util.Iterator<Interval>

Enclosing class:

IntervalList

public static class IntervalList.IntervalMergerIterator
extends java.lang.Object
implements java.util.Iterator<Interval>

An iterator that feeds on an Iterator and combines consecutive intervals that need merging. Overlapping intervals will always be merged, abutting intervals are optionally merged. The iterator assumes that the intervals are sorted. Results are undefined if they are not sorted.

Constructor Summary

Constructors

Constructor and Description
IntervalMergerIterator(java.util.Iterator<Interval> intervals, boolean combineAbuttingIntervals, boolean enforceSameStrand, boolean concatenateNames)

Method Summary

Modifier and Type	Method and Description
boolean	hasNext()
Interval	next()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining, remove

Constructor Detail

IntervalMergerIterator

public IntervalMergerIterator(java.util.Iterator<Interval> intervals,
                              boolean combineAbuttingIntervals,
                              boolean enforceSameStrand,
                              boolean concatenateNames)

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in interface java.util.Iterator<Interval>

next

public Interval next()

Specified by:

next in interface java.util.Iterator<Interval>