Package htsjdk.samtools

Class SAMHeaderRecordComparator<T extends AbstractSAMHeaderRecord>

java.lang.Object

htsjdk.samtools.SAMHeaderRecordComparator<T>

All Implemented Interfaces:

Serializable, Comparator<T>

public class SAMHeaderRecordComparator<T extends AbstractSAMHeaderRecord>
extends Object
implements Comparator<T>, Serializable

Provides ordering based on SAM header records' attribute values. Provide the list of attributes to use in the comparison to the constructor. Null attribute values (i.e., those attributes not present in the record) sort behind those that have values.

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
SAMHeaderRecordComparator(String... attributes)

Method Summary

Modifier and Type	Method	Description
int	compare(T left, T right)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong

Constructor Details

SAMHeaderRecordComparator

public SAMHeaderRecordComparator(String... attributes)

Method Details

compare

public int compare(T left,
 T right)

Specified by:

compare in interface Comparator<T extends AbstractSAMHeaderRecord>