Package htsjdk.beta.plugin

@BetaAPI package htsjdk.beta.plugin

Related Packages

Package	Description
htsjdk.beta.plugin.hapref
htsjdk.beta.plugin.interval
htsjdk.beta.plugin.reads
htsjdk.beta.plugin.registry
htsjdk.beta.plugin.variants

Class	Description
HtsCodec<D extends HtsDecoderOptions,E extends HtsEncoderOptions>	Base interface implemented by all htsjdk.beta.plugin codecs.
HtsContentType	The plugin framework defines a set of supported content types, each of which represents a type of HTS data such as "aligned reads".
HtsDecoder<H extends HtsHeader,R extends HtsRecord>	Base interface for decoders.
HtsDecoderOptions	Base tag interface for options for HtsDecoders.
HtsEncoder<H extends HtsHeader,R extends HtsRecord>	Base interface for encoders.
HtsEncoderOptions	Base tag interface for options for HtsEncoders.
HtsHeader	Tagging interface used as a type-bound for codec/encoder/decoder header type params.
HtsRecord	Tagging interface used as a type-bound for codec/encoder/decoder record type params.
HtsVersion	A class for representing 3-part versions with major, minor and patch segments.
IOUtils	Class for updated IOUtils methods that use either IOPath Path in public method argument lists.
Upgradeable	Placeholder interface for methods for upgrading one version of a format to a newer version.