Class/Object

com.intel.analytics.bigdl.nn

Graph

Related Docs: object Graph | package nn

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class Graph[T] extends Container[Activity, Activity, T]

A graph container. Each node can have multiple inputs. The output of the node should be a tensor. The output tensor can be connected to multiple nodes. So the module in each node can have a tensor or table input, and should have a tensor output.

The graph container can have multiple inputs and multiple outputs. If there's one input, the input data fed to the graph module should be a tensor. If there're multiple inputs, the input data fed to the graph module should be a table, which is actually an sequence of tensor. The order of the input tensors should be same with the order of the input nodes. This is also applied to the gradient from the module in the back propagation.

All of the input modules must accept a tensor input. If your input module accept multiple tensors as input, you should add some Input module before it as input nodes and connect the output of the Input modules to that module.

If there's one output, the module output is a tensor. If there're multiple outputs, the module output is a table, which is actually an sequence of tensor. The order of the output tensors is same with the order of the output modules. This is also applied to the gradient passed to the module in the back propagation.

All inputs should be able to connect to outputs through some paths in the graph. It is allowed that some successors of the inputs node are not connect to outputs. If so, these nodes will be excluded in the computation.

T

Numeric type. Only support float/double now

Annotations
@SerialVersionUID()
Linear Supertypes
Container[Activity, Activity, T], AbstractModule[Activity, Activity, T], Serializable, Serializable, AnyRef, Any
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Inherited
  1. Graph
  2. Container
  3. AbstractModule
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Graph(inputs: Seq[ModuleNode[T]], outputs: Seq[ModuleNode[T]], variables: Option[(Array[Tensor[T]], Array[Tensor[T]])] = None, generateBackward: Boolean = true)(implicit arg0: ClassTag[T], ev: TensorNumeric[T])

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    inputs

    input nodes

    outputs

    output nodes

    variables

    an Array of tensor containing all the weights and biases of this graph, used when different nodes of this graph may share the same weight or bias.

Type Members

  1. type absModule = AbstractModule[_ <: Activity, _ <: Activity, T]

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. def accGradParameters(input: Activity, gradOutput: Activity): Unit

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    Computing the gradient of the module with respect to its own parameters.

    Computing the gradient of the module with respect to its own parameters. Many modules do not perform this step as they do not have any parameters. The state variable name for the parameters is module dependent. The module is expected to accumulate the gradients with respect to the parameters in some variable.

    Definition Classes
    GraphAbstractModule
  5. def add(module: AbstractModule[_ <: Activity, _ <: Activity, T]): Graph.this.type

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    Add a sub-module to the contained modules

    Add a sub-module to the contained modules

    module

    module to be add

    returns

    this container

    Definition Classes
    GraphContainer
  6. def apply(name: String): Option[AbstractModule[Activity, Activity, T]]

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    Find a module with given name.

    Find a module with given name. If there is no module with given name, it will return None. If there are multiple modules with the given name, an exception will be thrown.

    Definition Classes
    ContainerAbstractModule
  7. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  8. def backward(input: Activity, gradOutput: Activity): Activity

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    Performs a back-propagation step through the module, with respect to the given input.

    Performs a back-propagation step through the module, with respect to the given input. In general this method makes the assumption forward(input) has been called before, with the same input. This is necessary for optimization reasons. If you do not respect this rule, backward() will compute incorrect gradients.

    input

    input data

    gradOutput

    gradient of next layer

    returns

    gradient corresponding to input data

    Definition Classes
    GraphAbstractModule
  9. var backwardTime: Long

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    Attributes
    protected
    Definition Classes
    AbstractModule
  10. def canEqual(other: Any): Boolean

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    Definition Classes
    ContainerAbstractModule
  11. def checkEngineType(): Graph.this.type

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    get execution engine type

    get execution engine type

    Definition Classes
    ContainerAbstractModule
  12. def clearState(): Graph.this.type

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    Clear cached activities to save storage space or network bandwidth.

    Clear cached activities to save storage space or network bandwidth. Note that we use Tensor.set to keep some information like tensor share

    The subclass should override this method if it allocate some extra resource, and call the super.clearState in the override method

    Definition Classes
    ContainerAbstractModule
  13. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  14. def cloneModule(): AbstractModule[Activity, Activity, T]

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    Definition Classes
    AbstractModule
  15. def copyStatus(src: Module[T]): Graph.this.type

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    Copy the useful running status from src to this.

    Copy the useful running status from src to this.

    The subclass should override this method if it has some parameters besides weight and bias. Such as runningMean and runningVar of BatchNormalization.

    src

    source Module

    returns

    this

    Definition Classes
    ContainerAbstractModule
  16. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  17. def equals(other: Any): Boolean

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    Definition Classes
    ContainerAbstractModule → AnyRef → Any
  18. def evaluate(): Graph.this.type

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    Definition Classes
    ContainerAbstractModule
  19. def evaluate(dataSet: LocalDataSet[MiniBatch[T]], vMethods: Array[ValidationMethod[T]]): Array[(ValidationResult, ValidationMethod[T])]

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    Definition Classes
    AbstractModule
  20. def evaluate(dataset: RDD[Sample[T]], vMethods: Array[ValidationMethod[T]], batchSize: Option[Int] = None): Array[(ValidationResult, ValidationMethod[T])]

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    use ValidationMethod to evaluate module

    use ValidationMethod to evaluate module

    dataset

    dataset for test

    vMethods

    validation methods

    batchSize

    total batchsize of all partitions, optional param and default 4 * partitionNum of dataset

    Definition Classes
    AbstractModule
  21. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  22. def findModules(moduleType: String): ArrayBuffer[AbstractModule[_, _, T]]

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    Definition Classes
    Container
  23. final def forward(input: Activity): Activity

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    Takes an input object, and computes the corresponding output of the module.

    Takes an input object, and computes the corresponding output of the module. After a forward, the output state variable should have been updated to the new value.

    input

    input data

    returns

    output data

    Definition Classes
    AbstractModule
  24. var forwardTime: Long

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    Attributes
    protected
    Definition Classes
    AbstractModule
  25. def freeze(names: String*): Graph.this.type

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    freeze the module, i.e.

    freeze the module, i.e. their parameters(weight/bias, if exists) are not changed in training process if names is not empty, set an array of layers that match the given names to be "freezed",

    names

    an array of layer names

    returns

    current graph model

    Definition Classes
    ContainerAbstractModule
  26. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  27. def getForwardExecutions: Array[Node[AbstractModule[Activity, Activity, T]]]

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    get forward executions, the dummy node will be filtered

  28. def getName(): String

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    Get the module name, default name is className@namePostfix

    Get the module name, default name is className@namePostfix

    Definition Classes
    AbstractModule
  29. def getNamePostfix: String

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    Definition Classes
    AbstractModule
  30. def getNumericType(): TensorDataType

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    returns

    Float or Double

    Definition Classes
    AbstractModule
  31. def getParameters(): (Tensor[T], Tensor[T])

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    This method compact all parameters and gradients of the model into two tensors.

    This method compact all parameters and gradients of the model into two tensors. So it's easier to use optim method

    Definition Classes
    AbstractModule
  32. def getParametersTable(): Table

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    This function returns a table contains ModuleName, the parameter names and parameter value in this module.

    This function returns a table contains ModuleName, the parameter names and parameter value in this module. The result table is a structure of Table(ModuleName -> Table(ParameterName -> ParameterValue)), and the type is Table[String, Table[String, Tensor[T]]].

    For example, get the weight of a module named conv1: table[Table]("conv1")[Tensor[T]]("weight").

    Custom modules should override this function if they have parameters.

    returns

    Table

    Definition Classes
    ContainerAbstractModule
  33. def getPrintName(): String

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    Attributes
    protected
    Definition Classes
    AbstractModule
  34. def getScaleB(): Double

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    Get the scale of gradientBias

    Get the scale of gradientBias

    Definition Classes
    AbstractModule
  35. def getScaleW(): Double

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    Get the scale of gradientWeight

    Get the scale of gradientWeight

    Definition Classes
    AbstractModule
  36. def getSortedForwardExecutions: Array[Node[AbstractModule[Activity, Activity, T]]]

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    Get forward executions, the dummy nodes and control dependency nodes will be filtered.

    Get forward executions, the dummy nodes and control dependency nodes will be filtered.

    This method will output a sorted executions. If the graph contains loop, it will throw an exception

  37. def getTimes(): Array[(AbstractModule[_ <: Activity, _ <: Activity, T], Long, Long)]

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    Definition Classes
    GraphContainerAbstractModule
  38. def getWeightsBias(): Array[Tensor[T]]

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    Get weight and bias for the module

    Get weight and bias for the module

    returns

    array of weights and bias

    Definition Classes
    AbstractModule
  39. var gradInput: Activity

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    The cached gradient of activities.

    The cached gradient of activities. So we don't compute it again when need it

    Definition Classes
    AbstractModule
  40. def hasName: Boolean

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    Definition Classes
    AbstractModule
  41. def hashCode(): Int

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    Definition Classes
    ContainerAbstractModule → AnyRef → Any
  42. def inputs(first: (ModuleNode[T], Int), nodesWithIndex: (ModuleNode[T], Int)*): ModuleNode[T]

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    Build graph: some other modules point to current module

    Build graph: some other modules point to current module

    first

    distinguish from another inputs when input parameter list is empty

    nodesWithIndex

    upstream module nodes and the output tensor index. The start index is 1.

    returns

    node containing current module

    Definition Classes
    AbstractModule
  43. def inputs(nodes: ModuleNode[T]*): ModuleNode[T]

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    Build graph: some other modules point to current module

    Build graph: some other modules point to current module

    nodes

    upstream module nodes

    returns

    node containing current module

    Definition Classes
    AbstractModule
  44. val inputs: Seq[ModuleNode[T]]

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    input nodes

  45. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  46. final def isTraining(): Boolean

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    Definition Classes
    AbstractModule
  47. var line: String

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    Attributes
    protected
    Definition Classes
    AbstractModule
  48. def loadModelWeights(srcModel: Module[Float], matchAll: Boolean = true): Graph.this.type

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    copy weights from another model, mapping by layer name

    copy weights from another model, mapping by layer name

    srcModel

    model to copy from

    matchAll

    whether to match all layers' weights and bias,

    returns

    current module

    Definition Classes
    AbstractModule
  49. def loadWeights(weightPath: String, matchAll: Boolean = true): Graph.this.type

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    load pretrained weights and bias to current module

    load pretrained weights and bias to current module

    weightPath

    file to store weights and bias

    matchAll

    whether to match all layers' weights and bias, if not, only load existing pretrained weights and bias

    returns

    current module

    Definition Classes
    AbstractModule
  50. val modules: ArrayBuffer[AbstractModule[Activity, Activity, T]]

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    Definition Classes
    Container
  51. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  52. final def notify(): Unit

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    Definition Classes
    AnyRef
  53. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  54. var output: Activity

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    The cached output.

    The cached output. So we don't compute it again when need it

    Definition Classes
    AbstractModule
  55. def parameters(): (Array[Tensor[T]], Array[Tensor[T]])

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    This function returns two arrays.

    This function returns two arrays. One for the weights and the other the gradients Custom modules should override this function if they have parameters

    returns

    (Array of weights, Array of grad)

    Definition Classes
    GraphContainerAbstractModule
  56. def predict(dataset: RDD[Sample[T]], batchSize: Int = 1, shareBuffer: Boolean = false): RDD[Activity]

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    module predict, return the probability distribution

    module predict, return the probability distribution

    dataset

    dataset for prediction

    batchSize

    total batchSize for all partitions. if -1, default is 4 * partitionNumber of datatset

    shareBuffer

    whether to share same memory for each batch predict results

    Definition Classes
    AbstractModule
  57. def predictClass(dataset: RDD[Sample[T]], batchSize: Int = 1): RDD[Int]

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    module predict, return the predict label

    module predict, return the predict label

    dataset

    dataset for prediction

    batchSize

    total batchSize for all partitions. if -1, default is 4 * partitionNumber of dataset

    Definition Classes
    AbstractModule
  58. def quantize(): Module[T]

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    Definition Classes
    AbstractModule
  59. def reset(): Unit

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    Definition Classes
    GraphContainerAbstractModule
  60. def resetModules(): Unit

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  61. def resetTimes(): Unit

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    Definition Classes
    GraphContainerAbstractModule
  62. def saveCaffe(prototxtPath: String, modelPath: String, useV2: Boolean = true, overwrite: Boolean = false): Graph.this.type

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    Definition Classes
    AbstractModule
  63. def saveDefinition(path: String, overWrite: Boolean = false): Graph.this.type

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    Save this module definition to path.

    Save this module definition to path.

    path

    path to save module, local file system, HDFS and Amazon S3 is supported. HDFS path should be like "hdfs://[host]:[port]/xxx" Amazon S3 path should be like "s3a://bucket/xxx"

    overWrite

    if overwrite

    returns

    self

    Definition Classes
    AbstractModule
  64. def saveGraphTopology(logPath: String, backward: Boolean = false): Graph.this.type

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    Save current model graph to a folder, which can be display in tensorboard by running tensorboard --logdir logPath

    Save current model graph to a folder, which can be display in tensorboard by running tensorboard --logdir logPath

    backward

    Draw backward graph instead of forward

  65. def saveModule(path: String, overWrite: Boolean = false): Graph.this.type

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    Save this module to path with protobuf format

    Save this module to path with protobuf format

    path

    path to save module, local file system, HDFS and Amazon S3 is supported. HDFS path should be like "hdfs://[host]:[port]/xxx" Amazon S3 path should be like "s3a://bucket/xxx"

    overWrite

    if overwrite

    returns

    self

    Definition Classes
    AbstractModule
  66. def saveTF(inputs: Seq[(String, Seq[Int])], path: String, byteOrder: ByteOrder = ByteOrder.LITTLE_ENDIAN, dataFormat: TensorflowDataFormat = TensorflowDataFormat.NHWC): Graph.this.type

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    Definition Classes
    AbstractModule
  67. def saveTorch(path: String, overWrite: Boolean = false): Graph.this.type

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    Definition Classes
    AbstractModule
  68. def saveWeights(path: String, overWrite: Boolean): Unit

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    save weights and bias to file

    save weights and bias to file

    path

    file to save

    overWrite

    whether to overwrite or not

    Definition Classes
    AbstractModule
  69. var scaleB: Double

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    Attributes
    protected
    Definition Classes
    AbstractModule
  70. var scaleW: Double

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    The scale of gradient weight and gradient bias before gradParameters being accumulated.

    The scale of gradient weight and gradient bias before gradParameters being accumulated.

    Attributes
    protected
    Definition Classes
    AbstractModule
  71. def setLine(line: String): Graph.this.type

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    Definition Classes
    AbstractModule
  72. def setName(name: String): Graph.this.type

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    Set the module name

    Set the module name

    Definition Classes
    AbstractModule
  73. def setNamePostfix(namePostfix: String): Unit

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    Definition Classes
    AbstractModule
  74. def setScaleB(b: Double): Graph.this.type

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    Set the scale of gradientBias

    Set the scale of gradientBias

    b

    the value of the scale of gradientBias

    returns

    this

    Definition Classes
    ContainerAbstractModule
  75. def setScaleW(w: Double): Graph.this.type

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    Set the scale of gradientWeight

    Set the scale of gradientWeight

    w

    the value of the scale of gradientWeight

    returns

    this

    Definition Classes
    ContainerAbstractModule
  76. def setWeightsBias(newWeights: Array[Tensor[T]]): Graph.this.type

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    Set weight and bias for the module

    Set weight and bias for the module

    newWeights

    array of weights and bias

    Definition Classes
    AbstractModule
  77. def stopGradient(names: Array[String]): Graph.this.type

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    stop the input gradient of layers that match the given names their input gradient are not computed.

    stop the input gradient of layers that match the given names their input gradient are not computed. And they will not contributed to the input gradient computation of layers that depend on them.

    names

    an array of layer names

    returns

    current graph model

  78. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  79. def toGraph(startNodes: ModuleNode[T]*): Graph[T]

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    Generate graph module with start nodes

    Generate graph module with start nodes

    Definition Classes
    GraphAbstractModule
  80. def toString(): String

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    Definition Classes
    AbstractModule → AnyRef → Any
  81. var train: Boolean

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    Module status.

    Module status. It is useful for modules like dropout/batch normalization

    Attributes
    protected
    Definition Classes
    AbstractModule
  82. def training(): Graph.this.type

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    Definition Classes
    ContainerAbstractModule
  83. def unFreeze(names: String*): Graph.this.type

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    "unfreeze" module, i.e.

    "unfreeze" module, i.e. make the module parameters(weight/bias, if exists) to be trained(updated) in training process if names is not empty, unfreeze layers that match given names

    names

    array of module names to unFreeze

    Definition Classes
    ContainerAbstractModule
  84. def updateGradInput(input: Activity, gradOutput: Activity): Activity

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    Computing the gradient of the module with respect to its own input.

    Computing the gradient of the module with respect to its own input. This is returned in gradInput. Also, the gradInput state variable is updated accordingly.

    Definition Classes
    GraphAbstractModule
  85. def updateOutput(input: Activity): Activity

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    Computes the output using the current parameter set of the class and input.

    Computes the output using the current parameter set of the class and input. This function returns the result which is stored in the output field.

    Definition Classes
    GraphAbstractModule
  86. def updateParameters(learningRate: T): Unit

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    Definition Classes
    ContainerAbstractModule
  87. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  88. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  89. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  90. def zeroGradParameters(): Unit

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    If the module has parameters, this will zero the accumulation of the gradients with respect to these parameters.

    If the module has parameters, this will zero the accumulation of the gradients with respect to these parameters. Otherwise, it does nothing.

    Definition Classes
    ContainerAbstractModule

Deprecated Value Members

  1. def save(path: String, overWrite: Boolean = false): Graph.this.type

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    Save this module to path.

    Save this module to path.

    path

    path to save module, local file system, HDFS and Amazon S3 is supported. HDFS path should be like "hdfs://[host]:[port]/xxx" Amazon S3 path should be like "s3a://bucket/xxx"

    overWrite

    if overwrite

    returns

    self

    Definition Classes
    AbstractModule
    Annotations
    @deprecated
    Deprecated

    please use recommended saveModule(path, overWrite)

Inherited from Container[Activity, Activity, T]

Inherited from AbstractModule[Activity, Activity, T]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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