BgenRecordWriter

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1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def calculateIntProbabilities(bitsPerProb: Int, probabilities: Seq[Double]): Seq[Long]

   

   Given a vector v = (v_1, ...

   Given a vector v = (v_1, ... v_d) of d probabilities that sum to one, we find the integer representation (where each int is stored in B bits) as follows:

   - Multiply v by 2**B-1. - Compute the total fractional part F = sum_i (v_i - floor(v_i)). - Form x by rounding the F entries of v with the largest fractional parts up to the nearest integer, and the other d-F entries down to the nearest smaller integer.

6. def clone(): AnyRef

   

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7. final def eq(arg0: AnyRef): Boolean

   

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8. def equals(arg0: Any): Boolean

   

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9. def finalize(): Unit

   

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10. final def getClass(): Class[_]

    

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11. def getProbabilityBlockSize(gc: GenotypeCharacteristics): ProbabilityBlockSize

    

12. def hashCode(): Int

    

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13. final def isInstanceOf[T0]: Boolean

    

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14. def minMax(a: Seq[Int], default: Int): (Int, Int)

    

15. final def ne(arg0: AnyRef): Boolean

    

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16. final def notify(): Unit

    

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17. final def notifyAll(): Unit

    

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18. final def synchronized[T0](arg0: ⇒ T0): T0

    

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19. def toString(): String

    

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20. final def wait(): Unit

    

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21. final def wait(arg0: Long, arg1: Int): Unit

    

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22. final def wait(arg0: Long): Unit

    

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23. def writeUTF8String(s: String, lengthAsInt: Boolean, output: DataOutput): Unit

    

24. def writeUnsignedByte(l: Long, output: DataOutput): Unit

    

25. def writeUnsignedInt(l: Long, output: DataOutput): Unit

    

26. def writeUnsignedShort(l: Long, output: DataOutput): Unit