1. com
   1. com.typesafe
      1. com.typesafe.scalalogging
         1. (trait)AbstractLogging
         2. (trait)LazyLogging
2. htsjdk
   1. htsjdk.variant
      1. htsjdk.variant.variantcontext
         1. htsjdk.variant.variantcontext.writer
            1. (object)
               VCFHeaderWriter
      2. htsjdk.variant.vcf
         1. (object)
            VCFEncoderUtils
3. io
   1. io.projectglow
      1. (trait)DataFrameTransformer
      2. (object)
         functions
      3. (object)
         Glow
      4. (class)GlowBase
      5. (object)
         SparkShim
      6. (trait)SparkShimBase
      1. io.projectglow.bgen
         1. (object)(class)BgenFileFormat
         2. (object)(class)BgenRecordWriter
         3. (class)BgenRowToInternalRowConverter
         4. (object)
            BgenSchemaInferrer
         5. (object)(class)BigBgenDatasource
         6. (case class)BigBgenOptions
         7. (class)ComDatabricksBgenFileFormat
         8. (class)ComDatabricksBigBgenDatasource
         9. (case class)FractionalPartIndex
         10. (case class)GenotypeCharacteristics
         11. (class)InternalRowToBgenRowConverter
         12. (case class)ProbabilityBlockSize
         13. (trait)SNPBlockCompression
         14. (class)SortByDescendingFractionalPart
         15. (object)
             Zlib
         16. (object)
             Zstd
      2. io.projectglow.common
         1. (object)
            BgenOptions
         2. (object)
            CommonOptions
         3. (object)
            FeatureSchemas
         4. (object)(case class)GenotypeFields
         5. (trait)GlowLogging
         6. (object)
            HailUtils
         7. (trait)HasStringency
         8. (trait)Named
         9. (object)
            PlinkOptions
         10. (case class)SimpleInterval
         11. (object)
             VariantSchemas
         12. (object)
             VCFOptions
         13. (object)(case class)VCFRow
         14. (object)
             WithUtils
         1. io.projectglow.common.logging
            1. (trait)HlsEventRecorder
            2. (object)
               HlsMetricDefinitions
            3. (object)
               HlsTagDefinitions
            4. (object)
               HlsTagValues
            5. (trait)HlsUsageLogging
            6. (case class)MetricDefinition
            7. (object)
               PythonHlsEventRecorder
            8. (case class)TagDefinition
      3. io.projectglow.gff
         1. (object)(class)GffDataSource
         2. (class)GffResourceRelation
      4. io.projectglow.plink
         1. (class)BedFileIterator
         2. (object)(class)PlinkFileFormat
         3. (class)PlinkRowToInternalRowConverter
      5. io.projectglow.sql
         1. (object)(class)BigFileDatasource
         2. (trait)BigFileUploader
         3. (class)Functions
         4. (class)GlowSQLExtensions
         5. (case class)SingleFileRelation
         6. (object)
            SingleFileWriter
         7. (object)
            SqlExtensionProvider
         1. io.projectglow.sql.dsl
            1. (class)GlowExpression
            2. (trait)ImplicitOperators
         2. io.projectglow.sql.expressions
            1. (case class)AddStructFields
            2. (trait)AggregateByIndex
            3. (case class)ArrayStatsSummary
            4. (object)(case class)ArrayToDenseVector
            5. (object)(case class)ArrayToSparseVector
            6. (object)(case class)CallStats
            7. (case class)CallStatsStruct
            8. (case class)CallSummaryStats
            9. (object)(case class)CovariateQRContext
            10. (case class)DpSummaryStats
            11. (case class)ExpandStruct
            12. (case class)ExplodeMatrix
            13. (case class)FirthFit
            14. (case class)FirthFitState
            15. (class)FirthNewtonArgs
            16. (object)
                FirthTest
            17. (case class)GenotypeStates
            18. (case class)GqSummaryStats
            19. (case class)HardCalls
            20. (object)(case class)HardyWeinberg
            21. (case class)HardyWeinbergStruct
            22. (case class)LiftOverCoordinatesExpr
            23. (object)
                LikelihoodRatioTest
            24. (object)(case class)LinearRegressionExpr
            25. (object)
                LinearRegressionGwas
            26. (object)(case class)LogisticRegressionExpr
            27. (object)
                LogisticRegressionGwas
            28. (class)LogisticRegressionState
            29. (trait)LogitTest
            30. (object)(case class)LogitTestResults
            31. (case class)LRTFitState
            32. (case class)MeanSubstitute
            33. (object)(case class)MomentAggState
            34. (class)NewtonIterationsState
            35. (case class)NewtonResult
            36. (object)(case class)NormalizeVariantExpr
            37. (case class)PerSampleSummaryStatistics
            38. (case class)RegressionStats
            39. (object)(case class)SampleCallStats
            40. (case class)SampleDpSummaryStatistics
            41. (case class)SampleGqSummaryStatistics
            42. (case class)SampleSummaryStatsState
            43. (case class)SubsetStruct
            44. (case class)UnwrappedAggregateByIndex
            45. (trait)UnwrappedAggregateFunction
            46. (object)
                VariantQcExprs
            47. (object)(trait)VariantType
            48. (object)
                VariantUtilExprs
            49. (object)(case class)VectorToArray
            50. (case class)WrappedAggregateByIndex
         3. io.projectglow.sql.optimizer
            1. (object)
               ReplaceExpressionsRule
            2. (object)
               ResolveAggregateFunctionsRule
            3. (object)
               ResolveExpandStructRule
            4. (object)
               ResolveGenotypeFields
         4. io.projectglow.sql.util
            1. (class)BGZFCodec
            2. (trait)ComDatabricksDataSource
            3. (trait)ExpectsGenotypeFields
            4. (case class)GenotypeInfo
            5. (class)HadoopLineIterator
            6. (object)(class)LeveneHaldane
            7. (trait)Rewrite
            8. (trait)RewriteAfterResolution
            9. (object)(class)RowConverter
            10. (class)SerializableConfiguration
      6. io.projectglow.transformers
         1. (object)(class)LiftOverVariantsTransformer
         1. io.projectglow.transformers.blockvariantsandsamples
            1. (object)(class)BlockVariantsAndSamplesTransformer
         2. io.projectglow.transformers.normalizevariants
            1. (object)(class)NormalizeVariantsTransformer
            2. (object)
               VariantNormalizer
         3. io.projectglow.transformers.pipe
            1. (class)CleanupPipeTransformer
            2. (class)CSVInputFormatter
            3. (class)CSVInputFormatterFactory
            4. (class)CSVOutputFormatter
            5. (class)CSVOutputFormatterFactory
            6. (trait)InputFormatter
            7. (trait)InputFormatterFactory
            8. (trait)OutputFormatter
            9. (trait)OutputFormatterFactory
            10. (class)PipeIterator
            11. (object)(class)PipeTransformer
            12. (object)
                ProcessHelper
            13. (class)UTF8TextInputFormatter
            14. (class)UTF8TextInputFormatterFactory
            15. (class)UTF8TextOutputFormatter
            16. (class)UTF8TextOutputFormatterFactory
         4. io.projectglow.transformers.splitmultiallelics
            1. (object)(class)SplitMultiallelicsTransformer
         5. io.projectglow.transformers.util
            1. (class)SnakeCaseMap
            2. (object)
               StringUtils
      7. io.projectglow.vcf
         1. (object)
            AnnotationUtils
         2. (object)(class)BigVCFDatasource
         3. (class)ComDatabricksBigVCFDatasource
         4. (class)ComDatabricksVCFFileFormat
         5. (object)
            FieldTypes
         6. (class)FilterContig
         7. (class)FilterInterval
         8. (object)
            InferSampleIds
         9. (object)(class)InternalRowToVariantContextConverter
         10. (class)LineIteratorImpl
         11. (case class)ParsedFilterResult
         12. (trait)SampleIdInfo
         13. (case class)SampleIds
         14. (object)
             TabixIndexHelper
         15. (object)(class)VariantContextToInternalRowConverter
         16. (object)(class)VCFFileFormat
         17. (class)VCFFileWriter
         18. (object)
             VCFHeaderUtils
         19. (class)VCFInputFormatter
         20. (class)VCFInputFormatterFactory
         21. (object)
             VCFMetadataLoader
         22. (class)VCFOutputFormatter
         23. (class)VCFOutputFormatterFactory
         24. (object)
             VCFRowHeaderLines
         25. (object)
             VCFSchemaInferrer
         26. (class)VCFStreamWriter
         27. (object)
             VCFWriterUtils
4. org
   1. org.apache
      1. org.apache.spark
         1. org.apache.spark.sql
            1. (object)
               SQLUtils
            1. org.apache.spark.sql.catalyst
               1. org.apache.spark.sql.catalyst.expressions
                  1. (class)SenaryExpression
            2. org.apache.spark.sql.execution
               1. org.apache.spark.sql.execution.datasources
                  1. org.apache.spark.sql.execution.datasources.csv
                     1. (object)
                        CSVDataSourceUtils
                     2. (class)MinimalFailureSafeParser
                     3. (class)SGUnivocityGenerator
                     4. (object)
                        UnivocityParserUtils
   2. org.seqdoop
      1. org.seqdoop.hadoop_bam
         1. org.seqdoop.hadoop_bam.util
            1. (object)(class)DatabricksBGZFOutputStream