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io.projectglow.sql.expressions

VariantUtilExprs

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object VariantUtilExprs

Implementations of utility functions for transforming variant representations. These implementations are called during both whole-stage codegen and interpreted execution.

The functions are exposed to the user as Catalyst expressions.

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. def containsTransition(refAllele: UTF8String, altAllele: UTF8String): Boolean

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  7. def containsTransversion(refAllele: UTF8String, altAllele: UTF8String): Boolean

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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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  11. def genotypeStates(genotypes: ArrayData, genotypesSize: Int, genotypesIdx: Int): ArrayData

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  12. final def getClass(): Class[_]

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  13. def hashCode(): Int

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  14. def isDeletion(refAllele: UTF8String, altAllele: UTF8String): Boolean

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  15. def isInsertion(refAllele: UTF8String, altAllele: UTF8String): Boolean

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  16. final def isInstanceOf[T0]: Boolean

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  17. def isSnp(refAllele: UTF8String, altAllele: UTF8String): Boolean

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  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. def toString(): String

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  23. def variantType(refAllele: UTF8String, altAllele: UTF8String): VariantType

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  24. final def wait(): Unit

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  25. final def wait(arg0: Long, arg1: Int): Unit

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  26. final def wait(arg0: Long): Unit

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