SAMPLE_BLOCK_COUNT
BlockVariantsAndSamplesTransformer
SAMPLE_FILE_PATH_OPTION_KEY
BgenOptions
SAMPLE_ID_COLUMN_OPTION_DEFAULT_VALUE
BgenOptions
SAMPLE_ID_COLUMN_OPTION_KEY
BgenOptions
SGUnivocityGenerator
csv
SNPBlockCompression
bgen
SPARK_BRANCH
spark
SPARK_BUILD_DATE
spark
SPARK_BUILD_USER
spark
SPARK_REPO_URL
spark
SPARK_REVISION
spark
SPARK_VERSION
spark
SPLITTER_TRANSFORMER_NAME
SplitMultiallelicsTransformer
SPLIT_TO_BIALLELIC
VCFOptions
SQLUtils
sql
STDERR_READER_THREAD_PREFIX
ProcessHelper
STDIN_WRITER_THREAD_PREFIX
ProcessHelper
SampleCallStats
expressions
SampleDpSummaryStatistics
expressions
SampleGqSummaryStatistics
expressions
SampleIdInfo
vcf
SampleIds
vcf
SampleSummaryStatsState
expressions
SenaryExpression
expressions
SerializableConfiguration
util
SimpleInterval
common
SingleFileRelation
sql
SingleFileWriter
sql
SnakeCaseMap
util
SortByDescendingFractionalPart
bgen
SpanningDeletion
VariantType
SparkShim
projectglow
SparkShimBase
projectglow
SplitMultiallelicsTransformer
splitmultiallelics
SqlExtensionProvider
sql
Strategy
sql
StringUtils
util
SubsetStruct
expressions
sampleBlockIdField
VariantSchemas
sampleId
GenotypeFields SampleCallStats SampleSummaryStatsState
sampleIdField
VariantSchemas
sampleIsMissing
VCFWriterUtils
sample_call_summary_stats
functions
sample_dp_summary_stats
functions
sample_gq_summary_stats
functions
scalalogging
typesafe
schema
VCFRow GffResourceRelation SingleFileRelation CallStats HardyWeinberg MomentAggState
score
NewtonIterationsState
scoreField
FeatureSchemas
seqIdField
FeatureSchemas
seqdoop
org
serialize
CallSummaryStats PerSampleSummaryStatistics
serializeDataFrame
BigBgenDatasource BigFileDatasource BigVCFDatasource
setHeader
VCFStreamWriter
setTaskContext
SQLUtils
setWriteEmptyBlockOnClose
DatabricksBGZFOutputStream
shortName
BgenFileFormat BigBgenDatasource GffDataSource PlinkFileFormat ComDatabricksDataSource BigVCFDatasource VCFFileFormat
size
GenotypeInfo
sizeField
VariantSchemas
solveUpperTriangular
FirthTest
sortKeyField
VariantSchemas
sortedSampleIds
SampleIds
sourceField
FeatureSchemas
spanWith
SimpleInterval
spark
apache
splitFromMultiAllelic
VCFRow
splitFromMultiAllelicField
VariantSchemas
splitmultiallelics
transformers
sql
projectglow spark
sqlContext
GffResourceRelation SingleFileRelation
sqrtW
FirthNewtonArgs
standardError
RegressionStats
start
SimpleInterval VCFRow LiftOverCoordinatesExpr NormalizeVariantExpr
startField
FeatureSchemas VariantSchemas
startInterval
ParsedFilterResult
state
NormalizeVariantExpr
stdDevField
VariantSchemas
strandField
FeatureSchemas
stream
BgenRecordWriter
stringency
HasStringency InternalRowToVariantContextConverter VariantContextToInternalRowConverter
struct
AddStructFields ExpandStruct SubsetStruct
structDelimiter
AnnotationUtils
structDelimiterRegex
AnnotationUtils
structFieldsEqualExceptNullability
SQLUtils
subsetExpr
VariantQcExprs
subset_struct
functions
substituteWithMean
MeanSubstitute
successColName
LiftOverVariantsTransformer
survivalFunction
LeveneHaldane
swapRefAlt
LiftOverVariantsTransformer