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transformers

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package transformers

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Type Members

class LiftOverVariantsTransformer extends DataFrameTransformer

Performs lift over from a variant on the reference sequence to a query sequence.
Performs lift over from a variant on the reference sequence to a query sequence. Similar to LiftOverCoordinatesExpr, but with additional fields for allele liftover.
The output schema consists of the input schema followed by the following fields: - Flattened INFO columns containing extra information added during liftover (eg. swapped alleles) - Status column
- Success (Boolean)
- Error message (if failed)

Value Members

object LiftOverVariantsTransformer extends GlowLogging
package blockvariantsandsamples
package normalizevariants
package pipe
package splitmultiallelics
package util

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