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io.projectglow.vcf

VCFWriterUtils

Related Doc: package vcf

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object VCFWriterUtils extends GlowLogging

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. def convertVcAttributesToStrings(vc: VariantContext): VariantContextBuilder

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  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def finalize(): Unit

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. def inferSampleIdsIfPresent(data: DataFrame): SampleIdInfo

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    Infer sample IDs from a genomic DataFrame.

    Infer sample IDs from a genomic DataFrame.

    - If there are no genotypes, there are no sample IDs. - If there are genotypes and sample IDs are all...

    • Present, the sample IDs are found by unifying sample IDs across all rows.
    • Missing, checks that the rows have the same number of genotypes.

  13. final def isInstanceOf[T0]: Boolean

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  14. lazy val logger: Logger

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  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. def sampleIsMissing(s: String): Boolean

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  19. final def synchronized[T0](arg0: ⇒ T0): T0

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  20. def throwMixedSamplesFailure(): Unit

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  21. def throwSampleInferenceFailure(): Unit

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  22. def toString(): String

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  23. final def wait(): Unit

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  24. final def wait(arg0: Long, arg1: Int): Unit

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  25. final def wait(arg0: Long): Unit

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