Class/Object

io.projectglow.common

GenotypeFields

Related Docs: object GenotypeFields | package common

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case class GenotypeFields(sampleId: Option[String], phased: Option[Boolean], calls: Option[Seq[Int]], depth: Option[Int], filters: Option[Seq[String]], genotypeLikelihoods: Option[Seq[Double]], phredLikelihoods: Option[Seq[Int]], posteriorProbabilities: Option[Seq[Double]], conditionalQuality: Option[Int], haplotypeQualities: Option[Seq[Int]], expectedAlleleCounts: Option[Seq[Int]], mappingQuality: Option[Int], alleleDepths: Option[Seq[Int]], otherFields: Map[String, String]) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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Instance Constructors

  1. new GenotypeFields(sampleId: Option[String], phased: Option[Boolean], calls: Option[Seq[Int]], depth: Option[Int], filters: Option[Seq[String]], genotypeLikelihoods: Option[Seq[Double]], phredLikelihoods: Option[Seq[Int]], posteriorProbabilities: Option[Seq[Double]], conditionalQuality: Option[Int], haplotypeQualities: Option[Seq[Int]], expectedAlleleCounts: Option[Seq[Int]], mappingQuality: Option[Int], alleleDepths: Option[Seq[Int]], otherFields: Map[String, String])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. val alleleDepths: Option[Seq[Int]]

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  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. val calls: Option[Seq[Int]]

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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val conditionalQuality: Option[Int]

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  9. val depth: Option[Int]

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  10. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  11. val expectedAlleleCounts: Option[Seq[Int]]

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  12. val filters: Option[Seq[String]]

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  13. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. val genotypeLikelihoods: Option[Seq[Double]]

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  15. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  16. val haplotypeQualities: Option[Seq[Int]]

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  17. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  18. val mappingQuality: Option[Int]

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  19. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  20. final def notify(): Unit

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    AnyRef

  21. final def notifyAll(): Unit

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    Definition Classes
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  22. val otherFields: Map[String, String]

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  23. val phased: Option[Boolean]

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  24. val phredLikelihoods: Option[Seq[Int]]

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  25. val posteriorProbabilities: Option[Seq[Double]]

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  26. val sampleId: Option[String]

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  27. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  28. final def wait(): Unit

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    @throws( ... )

  29. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  30. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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