TabixIndexHelper

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. final def ==(arg0: Any): Boolean

   

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4. final def asInstanceOf[T0]: T0

   

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5. def clone(): AnyRef

   

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6. final def eq(arg0: AnyRef): Boolean

   

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7. def equals(arg0: Any): Boolean

   

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8. def finalize(): Unit

   

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9. final def getClass(): Class[_]

   

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10. def getFileRangeToRead(hadoopFs: FileSystem, file: PartitionedFile, conf: Configuration, hasFilter: Boolean, useIndex: Boolean, filteredSimpleInterval: Option[SimpleInterval]): Option[(Long, Long)]

    

    Performs all the checks needed to use tabix index If a check fails generates appropriate message Otherwise generates block range by querying tabix index based on the filteredSimpleInterval produces by makeFilteredInterval.

11. def hashCode(): Int

    

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12. final def isInstanceOf[T0]: Boolean

    

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13. lazy val logger: Logger

    

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14. def makeFilteredInterval(filters: Seq[Filter], useFilterParser: Boolean, useIndex: Boolean): Option[SimpleInterval]

    

    Getting Seq of filters, returns an Option[SimpleInterval] representing contig and SQI, and takes care of useFilterParser option.

    Getting Seq of filters, returns an Option[SimpleInterval] representing contig and SQI, and takes care of useFilterParser option.

    returns

    Option[SimpleInterval] indicating contig and SQI of the filtered interval; None: if filter results in a null set of records; Contig is empty if filtering is skipped due to multiple contigs or unsupported elements.

15. final def ne(arg0: AnyRef): Boolean

    

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16. final def notify(): Unit

    

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17. final def notifyAll(): Unit

    

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18. final def synchronized[T0](arg0: ⇒ T0): T0

    

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19. def toString(): String

    

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20. final def wait(): Unit

    

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21. final def wait(arg0: Long, arg1: Int): Unit

    

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22. final def wait(arg0: Long): Unit

    

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