Class

io.projectglow.vcf

VCFInputFormatter

Related Doc: package vcf

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class VCFInputFormatter extends InputFormatter with GlowLogging

An input formatter that writes rows as VCF records.

Linear Supertypes
GlowLogging, LazyLogging, LazyLogging, Logging, InputFormatter, Closeable, AutoCloseable, Serializable, Serializable, AnyRef, Any
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Inherited
  1. VCFInputFormatter
  2. GlowLogging
  3. LazyLogging
  4. LazyLogging
  5. Logging
  6. InputFormatter
  7. Closeable
  8. AutoCloseable
  9. Serializable
  10. Serializable
  11. AnyRef
  12. Any
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Visibility
  1. Public
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Instance Constructors

  1. new VCFInputFormatter(converter: InternalRowToVariantContextConverter, sampleIdInfo: SampleIdInfo)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  6. def close(): Unit

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    Definition Classes
    VCFInputFormatterInputFormatter → Closeable → AutoCloseable
  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  11. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  12. def init(stream: OutputStream): Unit

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    Initialize the input formatter based on the outstream (i.e., the subprocess's stdout).

    Initialize the input formatter based on the outstream (i.e., the subprocess's stdout).

    This method is called per-partition, so all non-serializable initialization should happen here.

    Definition Classes
    VCFInputFormatterInputFormatter
  13. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  14. lazy val logger: Logger

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    Attributes
    protected
    Definition Classes
    LazyLogging → Logging
  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. final def notify(): Unit

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    Definition Classes
    AnyRef
  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  18. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  19. def toString(): String

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  20. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
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    Annotations
    @throws( ... )
  22. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )
  23. def write(record: InternalRow): Unit

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    Write a DataFrame record to the subprocess's stdout stream.

    Write a DataFrame record to the subprocess's stdout stream.

    Definition Classes
    VCFInputFormatterInputFormatter

Inherited from GlowLogging

Inherited from LazyLogging

Inherited from LazyLogging

Inherited from Logging

Inherited from InputFormatter

Inherited from Closeable

Inherited from AutoCloseable

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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