Trait

io.projectglow.sql.expressions

LogitTest

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trait LogitTest extends Serializable

Base trait for logistic regression tests

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Serializable, Serializable, AnyRef, Any
Known Subclasses
FirthTest, LikelihoodRatioTest
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Type Members

  1. abstract type FitState

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    Type for the state that the test maintains between variants.

Abstract Value Members

  1. abstract def fitStatePerPhenotype: Boolean

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    If true, the FitState uses per-phenotype information and must be refit for each phenotype.

    If true, the FitState uses per-phenotype information and must be refit for each phenotype. If false, the FitState only depends on the covariates

  2. abstract def init(phenotypes: Array[Double], covariates: DenseMatrix): FitState

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    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    Initializes a FitState for a (covariate matrix, phenotype array) pair.

    As much memory allocation as possible should be performed in this step to avoid allocations in the per-row fit.

  3. abstract def resultSchema: StructType

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  4. abstract def runTest(genotypes: DenseVector[Double], phenotypes: DenseVector[Double], fitState: FitState): InternalRow

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Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  5. def clone(): AnyRef

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  8. def finalize(): Unit

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  13. final def notify(): Unit

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  14. final def notifyAll(): Unit

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  15. final def synchronized[T0](arg0: ⇒ T0): T0

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  16. def toString(): String

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  17. final def wait(): Unit

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  18. final def wait(arg0: Long, arg1: Int): Unit

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  19. final def wait(arg0: Long): Unit

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