io.tiledb.java.api

Class Attribute

java.lang.Object

io.tiledb.java.api.Attribute

All Implemented Interfaces:

java.lang.AutoCloseable

public class Attribute
extends java.lang.Object
implements java.lang.AutoCloseable

Describes an Attribute of an Array cell.

An Attribute specifies a datatype for a particular parameter in each array cell. There are 3 supported Attribute types:

• Fundamental types: Character, String, Byte, Boolean, Short, Integer, Long, Double and Float.
• Fixed sized arrays of the above types.
• Variable length arrays of the above types.

Example:

 Context ctx = new Context();
 Attribute a1 = new Attribute(ctx,"a1",Integer.class);
 Attribute a2 = new Attribute(ctx,"a2",Character.class);
 Attribute a3 = new Attribute(ctx,"a3",Float.class);

 // Change compression scheme
 a1.setFilterList(new FilterList(ctx).addFilter(new LZ4Filter(ctx)));
 a2.setCellValNum(TILEDB_VAR_NUM); // Variable sized character attribute (String)
 a3.setCellValNum(2); // 2 floats stored per cell

 ArraySchema schema = new ArraySchema(ctx, TILEDB_DENSE);
 schema.setDomain(domain);
 schema.addAttribute(a1);
 schema.addAttribute(a2);
 schema.addAttribute(a3);
 

Constructor Summary

Constructors

Modifier	Constructor and Description
	Attribute(Context ctx, java.lang.String name, java.lang.Class attrType) Construct an attribute with a name and java class type.
	Attribute(Context ctx, java.lang.String name, Datatype attrType) Construct an attribute with name and TileDB Datatype.
protected	Attribute(Context ctx, SWIGTYPE_p_p_tiledb_attribute_t attributepp)

Method Summary

Modifier and Type	Method and Description
void	close() Free's native TileDB resources associated with the Attribute object
protected SWIGTYPE_p_tiledb_attribute_t	getAttributep()
long	getCellSize()
long	getCellValNum()
Pair<java.lang.Object,java.lang.Integer>	getFillValue() Gets the default fill value for the input attribute.
Pair<java.lang.Object,Pair<java.lang.Integer,java.lang.Boolean>>	getFillValueNullable() Gets the default fill value for the input, nullable attribute.
FilterList	getFilterList() Gets the list of filtes associated with the attribute
java.lang.String	getName()
Datatype	getType()
boolean	isVar()
Attribute	setCellValNum(long size) Sets the number of Attribute values per cell.
Attribute	setCellVar() Sets the Attribute to have variable length cell representation
void	setFillValue(NativeArray value, java.math.BigInteger size) Sets the default fill value for the input attribute.
void	setFillValue(java.lang.Object value) Sets the default fill value for the input attribute.
void	setFillValueNullable(NativeArray value, java.math.BigInteger size, boolean valid) Sets the default fill value for the input, nullable attribute.
void	setFillValueNullable(java.lang.Object value, boolean valid) Sets the default fill value for the input, nullable attribute.
Attribute	setFilterList(FilterList filters) Sets the Attribute FilterList.
int	setNullable(boolean isNullable)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Attribute

public Attribute(Context ctx,
                 java.lang.String name,
                 java.lang.Class attrType)
          throws TileDBError

Construct an attribute with a name and java class type. `cellValNum` will be set to 1.

Parameters:

ctx - TileDB context

name - Name of the attribute

attrType - Java class type of the attribute

Throws:

TileDBError - A TileDB exception

Attribute

public Attribute(Context ctx,
                 java.lang.String name,
                 Datatype attrType)
          throws TileDBError

Construct an attribute with name and TileDB Datatype. `cellValNum` will be set to 1.

Parameters:

ctx - TileDB Context

name - Name of the attribute

attrType - TileDB Datatype of attribute

Throws:

TileDBError - A TileDB exception

Attribute

protected Attribute(Context ctx,
                    SWIGTYPE_p_p_tiledb_attribute_t attributepp)
             throws TileDBError

Throws:

TileDBError

Method Detail

getAttributep

protected SWIGTYPE_p_tiledb_attribute_t getAttributep()

getName

public java.lang.String getName()
                         throws TileDBError

Returns:

The name of the Attribute.

Throws:

TileDBError - A TileDB exception

getType

public Datatype getType()
                 throws TileDBError

Returns:

The Attribute Enumerated datatype (TileDB type).

Throws:

TileDBError - A TileDB exception

getCellSize

public long getCellSize()
                 throws TileDBError

Returns:

The size (in bytes) of one cell on this Attribute.

Throws:

TileDBError - A TileDB exception

getCellValNum

public long getCellValNum()
                   throws TileDBError

Returns:

The number of values stored in each cell. This is equal to the size of the Attribute * sizeof(attributeType). For variable size attributes this is TILEDB_VAR_NUM.

Throws:

TileDBError - A TileDB exception

isVar

public boolean isVar()
              throws TileDBError

Returns:

True if this is a variable length Attribute.

Throws:

TileDBError - A TileDB exception

setCellValNum

public Attribute setCellValNum(long size)
                        throws TileDBError

Sets the number of Attribute values per cell.

Parameters:

size - The number of values per cell. Use TILEDB_VAR_NUM for variable length.

Throws:

TileDBError - A TileDB exception

setCellVar

public Attribute setCellVar()
                     throws TileDBError

Sets the Attribute to have variable length cell representation

Returns:

Attribute

Throws:

TileDBError - A TileDB exception

setFilterList

public Attribute setFilterList(FilterList filters)
                        throws TileDBError

Sets the Attribute FilterList.

Parameters:

filters - A TileDB FilterList

Throws:

TileDBError - A TileDB exception

getFilterList

public FilterList getFilterList()
                         throws TileDBError

Gets the list of filtes associated with the attribute

Returns:

A FilterList instance

Throws:

TileDBError - A TileDB exception

setFillValue

public void setFillValue(NativeArray value,
                         java.math.BigInteger size)
                  throws TileDBError

Sets the default fill value for the input attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Applicable to var-sized attributes.

Parameters:

value - The fill value

size - The fill value size

Throws:

TileDBError

setFillValue

public void setFillValue(java.lang.Object value)
                  throws TileDBError

Sets the default fill value for the input attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Applicable to var-sized attributes.

Parameters:

value - The fill value

Throws:

TileDBError

getFillValue

public Pair<java.lang.Object,java.lang.Integer> getFillValue()
                                                      throws TileDBError

Gets the default fill value for the input attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Applicable to both fixed-sized and var-sized attributes.

Returns:

A pair with the fill value and its size

Throws:

TileDBError

setFillValueNullable

public void setFillValueNullable(NativeArray value,
                                 java.math.BigInteger size,
                                 boolean valid)
                          throws TileDBError

Sets the default fill value for the input, nullable attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Parameters:

value - The fill value to set.

size - The fill value size in bytes.

valid - The validity fill value, zero for a null value and non-zero for a valid attribute.

Throws:

TileDBError

setFillValueNullable

public void setFillValueNullable(java.lang.Object value,
                                 boolean valid)
                          throws TileDBError

Sets the default fill value for the input, nullable attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Parameters:

value - The fill value to set.

valid - The validity fill value, zero for a null value and non-zero for a valid attribute.

Throws:

TileDBError

getFillValueNullable

public Pair<java.lang.Object,Pair<java.lang.Integer,java.lang.Boolean>> getFillValueNullable()
                                                                                      throws TileDBError

Gets the default fill value for the input, nullable attribute. This value will be used for the input attribute whenever querying (1) an empty cell in a dense array, or (2) a non-empty cell (in either dense or sparse array) when values on the input attribute are missing (e.g., if the user writes a subset of the attributes in a write operation).

Applicable to both fixed-sized and var-sized attributes.

Returns:

A pair which contains the fill value and a pair with its size and validity field i.e. Pair(5, Pair(4, true))

Throws:

TileDBError

setNullable

public int setNullable(boolean isNullable)
                throws TileDBError

Throws:

TileDBError

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

Returns:

A String representation for the Attribute.

close

public void close()

Free's native TileDB resources associated with the Attribute object

Specified by:

close in interface java.lang.AutoCloseable