ADAM_2.11: CLI 0.33.0 API

ReadFilter

recalibrateBaseQualities

TransformAlignmentsArgs

reference

TransformAlignmentsArgs

referencePath

TransformFeaturesArgs

regionPredicate

TransformAlignmentsArgs

repartition

ADAM2FastqArgs CountReadKmersArgs TransformAlignmentsArgs

run

ADAM2Fastq CountReadKmers CountSliceKmers Coverage FlagStat MergeShards PrintADAM TransformAlignments TransformFeatures TransformFragments TransformGenotypes TransformSequences TransformSlices TransformVariants View