ADAM_2.11: CLI 0.23.0 API

saveAsReads

TransformFragmentsArgs

scalaVersion

single

TransformFeaturesArgs

sort

TransformGenotypesArgs TransformVariantsArgs

sortFastqOutput

TransformAlignmentsArgs TransformFragmentsArgs TransformGenotypesArgs TransformVariantsArgs ViewArgs

sortLexicographically

Reads2CoverageArgs TransformAlignmentsArgs TransformFragmentsArgs TransformGenotypesArgs TransformVariantsArgs

sortReads

TransformAlignmentsArgs TransformFragmentsArgs

sparkVersion

storageLevel

TransformAlignmentsArgs

stringency

FlagStatArgs TransformAlignments TransformAlignmentsArgs TransformGenotypes TransformGenotypesArgs TransformVariants TransformVariantsArgs