InFormatterCompanion

A trait for singleton objects that build an InFormatter from a GenomicDataset.

Often, when creating an outputstream, we need to add metadata to the output that is not attached to individual records. An example of this is writing a header with contig/read group/format info, as is done with SAM/BAM/VCF.

T: The type of the records this InFormatter writes out.
U: The type of the GenomicDataset this companion object understands.
V: The type of InFormatter this companion object creates.

Linear Supertypes

AnyRef, Any

Known Subclasses

AnySAMInFormatterCompanion, BAMInFormatter, BEDInFormatter, FASTAInFormatter, FASTQInFormatter, GFF3InFormatter, GTFInFormatter, InterleavedFASTQInFormatter, NarrowPeakInFormatter, SAMInFormatter, Tab5InFormatter, Tab6InFormatter, VCFInFormatter

Abstract Value Members

abstract def apply(gDataset: V): W

Creates an InFormatter from a GenomicDataset.
Creates an InFormatter from a GenomicDataset.
gDataset
The GenomicDataset to get metadata from.
returns
Returns an InFormatter with attached metadata.

Concrete Value Members

final def !=(arg0: Any): Boolean

Definition Classes
AnyRef → Any
final def ##(): Int

Definition Classes
AnyRef → Any
final def ==(arg0: Any): Boolean

Definition Classes
AnyRef → Any
final def asInstanceOf[T0]: T0

Definition Classes
Any
def clone(): AnyRef

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( ... )
final def eq(arg0: AnyRef): Boolean

Definition Classes
AnyRef
def equals(arg0: Any): Boolean

Definition Classes
AnyRef → Any
def finalize(): Unit

Attributes
protected[java.lang]
Definition Classes
AnyRef
Annotations
@throws( classOf[java.lang.Throwable] )
final def getClass(): Class[_]

Definition Classes
AnyRef → Any
def hashCode(): Int

Definition Classes
AnyRef → Any
final def isInstanceOf[T0]: Boolean

Definition Classes
Any
final def ne(arg0: AnyRef): Boolean

Definition Classes
AnyRef
final def notify(): Unit

Definition Classes
AnyRef
final def notifyAll(): Unit

Definition Classes
AnyRef
final def synchronized[T0](arg0: ⇒ T0): T0

Definition Classes
AnyRef
def toString(): String

Definition Classes
AnyRef → Any
final def wait(): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long, arg1: Int): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )
final def wait(arg0: Long): Unit

Definition Classes
AnyRef
Annotations
@throws( ... )

Related Doc: package rdd

trait InFormatterCompanion[T, U <: Product, V <: GenomicDataset[T, U, V], W <: InFormatter[T, U, V, W]] extends AnyRef

Abstract Value Members

abstract def apply(gDataset: V): W

Concrete Value Members

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

final def asInstanceOf[T0]: T0

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

Inherited from AnyRef

Inherited from Any

Ungrouped