Object/Class

org.bdgenomics.adam.rdd.sequence

SliceDataset

Related Docs: class SliceDataset | package sequence

Permalink

object SliceDataset

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. SliceDataset
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. def apply(rdd: RDD[Slice], sd: SequenceDictionary): SliceDataset

    Permalink

    Builds a SliceDataset given a sequence dictionary.

    Builds a SliceDataset given a sequence dictionary.

    rdd

    The underlying Slice RDD to build from.

    sd

    The sequence dictionary for this SliceDataset.

    returns

    Returns a new SliceDataset.

  5. def apply(rdd: RDD[Slice]): SliceDataset

    Permalink

    Builds a SliceDataset with an empty sequence dictionary.

    Builds a SliceDataset with an empty sequence dictionary.

    rdd

    The underlying Slice RDD to build from.

    returns

    Returns a new SliceDataset.

  6. def apply(ds: Dataset[Slice], sequences: SequenceDictionary): SliceDataset

    Permalink

    A genomic dataset that wraps a dataset of Slice data.

    A genomic dataset that wraps a dataset of Slice data.

    ds

    A Dataset of slices.

    sequences

    The reference genome these data are aligned to.

  7. def apply(ds: Dataset[Slice]): SliceDataset

    Permalink

    A genomic dataset that wraps a dataset of Slice data.

    A genomic dataset that wraps a dataset of Slice data.

    ds

    A Dataset of slices.

  8. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  9. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  10. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  11. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  12. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  13. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  14. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  15. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  16. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  17. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  18. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  19. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  20. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  21. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  22. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  23. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from AnyRef

Inherited from Any

Ungrouped