org.bdgenomics.adam.models

SequenceDictionary

class SequenceDictionary extends Serializable

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Instance Constructors

  1. new SequenceDictionary()

  2. new SequenceDictionary(records: Vector[SequenceRecord])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. def +(record: SequenceRecord): SequenceDictionary

  5. def ++(that: SequenceDictionary): SequenceDictionary

  6. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  8. def apply(name: String): Option[SequenceRecord]

  9. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  11. def containsRefName(name: String): Boolean

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(o: Any): Boolean

    Definition Classes
    SequenceDictionary → AnyRef → Any

  14. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  16. def hashCode(): Int

    Definition Classes
    SequenceDictionary → AnyRef → Any

  17. def isCompatibleWith(that: SequenceDictionary): Boolean

  18. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. final def notify(): Unit

    Definition Classes
    AnyRef

  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  22. val records: Vector[SequenceRecord]

  23. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  24. def toSAMSequenceDictionary: SAMSequenceDictionary

    Converts this ADAM style sequence dictionary into a SAM style sequence dictionary.

    Converts this ADAM style sequence dictionary into a SAM style sequence dictionary.

    returns

    Returns a SAM formatted sequence dictionary.

  25. def toString(): String

    Definition Classes
    SequenceDictionary → AnyRef → Any

  26. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  27. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
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    @throws( ... )

  28. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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