Writes alignment records to an output stream in Bowtie tab5 format.
Writes alignment records to an output stream in Bowtie tab5 format.
In Bowtie tab5 format, each alignment record or pair is on a single line. An unpaired alignment record line is [name]\t[seq]\t[qual]\n. A paired-end read line is [name]\t[seq1]\t[qual1]\t[seq2]\t[qual2]\n.
The read name for a paired-end read line is the name of the first read with the suffix trimmed.
An OutputStream connected to a process we are piping to.
An iterator of records to write.