class
VariantAnnotation extends Product
Instance Constructors
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new
VariantAnnotation(ancestralAllele: Option[String], alleleCount: Option[Int], readDepth: Option[Int], forwardReadDepth: Option[Int], reverseReadDepth: Option[Int], referenceReadDepth: Option[Int], referenceForwardReadDepth: Option[Int], referenceReverseReadDepth: Option[Int], alleleFrequency: Option[Float], cigar: Option[String], dbSnp: Option[Boolean], hapMap2: Option[Boolean], hapMap3: Option[Boolean], validated: Option[Boolean], thousandGenomes: Option[Boolean], somatic: Option[Boolean], transcriptEffects: Seq[TranscriptEffect], attributes: Map[String, String])
Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: AnyRef): Boolean
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final
def
==(arg0: Any): Boolean
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val
alleleCount: Option[Int]
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val
alleleFrequency: Option[Float]
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val
ancestralAllele: Option[String]
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final
def
asInstanceOf[T0]: T0
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val
attributes: Map[String, String]
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def
canEqual(that: Any): Boolean
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val
cigar: Option[String]
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def
clone(): AnyRef
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val
dbSnp: Option[Boolean]
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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val
forwardReadDepth: Option[Int]
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final
def
getClass(): Class[_]
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val
hapMap2: Option[Boolean]
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val
hapMap3: Option[Boolean]
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def
hashCode(): Int
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final
def
isInstanceOf[T0]: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
productArity: Int
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def
productElement(i: Int): Any
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def
productIterator: Iterator[Any]
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def
productPrefix: String
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val
readDepth: Option[Int]
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val
referenceForwardReadDepth: Option[Int]
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val
referenceReadDepth: Option[Int]
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val
referenceReverseReadDepth: Option[Int]
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val
reverseReadDepth: Option[Int]
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val
somatic: Option[Boolean]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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val
thousandGenomes: Option[Boolean]
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def
toAvro: formats.avro.VariantAnnotation
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def
toString(): String
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val
validated: Option[Boolean]
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
Inherited from Product
Inherited from Equals
Inherited from AnyRef
Inherited from Any