GenotypeRDD

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final def !=(arg0: Any): Boolean

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final def ##(): Int

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final def ==(arg0: Any): Boolean

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def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeRDD

An RDD containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.
An RDD containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.
ds
Called genotypes.
sequences
A dictionary describing the reference genome.
samples
The samples called.
headerLines
The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Genotypes.
def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeRDD

An RDD containing genotypes called in a set of samples against a given reference genome.
An RDD containing genotypes called in a set of samples against a given reference genome.
rdd
Called genotypes.
sequences
A dictionary describing the reference genome.
samples
The samples called.
headerLines
The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Genotypes.
final def asInstanceOf[T0]: T0

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def clone(): AnyRef

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protected[java.lang]
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final def eq(arg0: AnyRef): Boolean

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def equals(arg0: Any): Boolean

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def finalize(): Unit

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final def getClass(): Class[_]

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def hashCode(): Int

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final def isInstanceOf[T0]: Boolean

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final def ne(arg0: AnyRef): Boolean

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final def notify(): Unit

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final def notifyAll(): Unit

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final def synchronized[T0](arg0: ⇒ T0): T0

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def toString(): String

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final def wait(): Unit

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final def wait(arg0: Long): Unit

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Related Docs: class GenotypeRDD | package variant

object GenotypeRDD extends Serializable

Value Members

final def !=(arg0: Any): Boolean

final def ##(): Int

final def ==(arg0: Any): Boolean

def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeRDD

def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeRDD

final def asInstanceOf[T0]: T0

def clone(): AnyRef

final def eq(arg0: AnyRef): Boolean

def equals(arg0: Any): Boolean

def finalize(): Unit

final def getClass(): Class[_]

def hashCode(): Int

final def isInstanceOf[T0]: Boolean

final def ne(arg0: AnyRef): Boolean

final def notify(): Unit

final def notifyAll(): Unit

final def synchronized[T0](arg0: ⇒ T0): T0

def toString(): String

final def wait(): Unit

final def wait(arg0: Long, arg1: Int): Unit

final def wait(arg0: Long): Unit

Inherited from Serializable

Inherited from Serializable

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