Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
OutFormatter that reads streaming VCF.
An RDD containing VariantContexts attached to a reference and samples.
An RDD containing VariantContexts attached to a reference and samples.
The underlying RDD of VariantContexts.
The genome sequence these variants were called against.
The genotyped samples in this RDD of VariantContexts.
The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of VariantContexts.
InFormatter companion that builds a VCFInFormatter to write VCF to a pipe.
Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
The key type. Keys are not written.